View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_11 (Length: 263)
Name: NF12396_low_11
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 6133802 - 6133568
Alignment:
| Q |
18 |
acgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccata |
117 |
Q |
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| T |
6133802 |
acgaaactgggtagatcttccacgagattcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccata |
6133703 |
T |
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| Q |
118 |
tggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgccgaattcagccgaccctaacactaaatgggggttactgaatctatgctacc |
217 |
Q |
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| T |
6133702 |
tggcgcgaaatctcaaaggaccattccctctatcgcactatcaacatgcccaattcagccgaccctaacactaaatgggagttactgaatctatgctacc |
6133603 |
T |
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| Q |
218 |
gcgcagttgattacagcttcggccacataattcat |
252 |
Q |
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| T |
6133602 |
gcgcagttgattacagcttcggccacataattcat |
6133568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 6052101 - 6052255
Alignment:
| Q |
18 |
acgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccata |
117 |
Q |
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| T |
6052101 |
acgaaactggctggatcttccacgagatgcagtcttatccattttccggaagctcgacgcaatcgatcttctcgttcgcgctcacaatgtttgcaccaca |
6052200 |
T |
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| Q |
118 |
tggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgccgaatt |
172 |
Q |
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| T |
6052201 |
tggcgcaaaatctccaaagacccttttctctttcgcaccattaacatgcccaatt |
6052255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 6037110 - 6037242
Alignment:
| Q |
18 |
acgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccata |
117 |
Q |
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|||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| | | || |||||||| |||||| || || |||||||| | |
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| T |
6037110 |
acgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcccagggtttgcactacg |
6037209 |
T |
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| Q |
118 |
tggcgcgaaatctcaaaggacccttccctctat |
150 |
Q |
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| T |
6037210 |
tggcgcaaaatctccaaagaccctttcctctat |
6037242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 6045419 - 6045567
Alignment:
| Q |
19 |
cgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcaccatat |
118 |
Q |
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| T |
6045419 |
cgaaactggttggatcttccatcagatgtcgtattaaccattttccggaaacttcacacgatcgatcttctccatcgcgctcataacgtttgcaccacat |
6045518 |
T |
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| Q |
119 |
ggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgcc |
167 |
Q |
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| T |
6045519 |
ggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatgcc |
6045567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 6040872 - 6040936
Alignment:
| Q |
103 |
aatgtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgcc |
167 |
Q |
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| T |
6040872 |
aatgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatgcc |
6040936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 6052292 - 6052332
Alignment:
| Q |
209 |
tatgctaccgcgcagttgattacagcttcggccacataatt |
249 |
Q |
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| T |
6052292 |
tatgccagcgcgcagttgattacagctgcggccacataatt |
6052332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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