View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_12 (Length: 259)
Name: NF12396_low_12
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 45160690 - 45160920
Alignment:
| Q |
13 |
ctgtgatccatttttgttgggtatgtgattaacacaatttcatatgaaagttatcttgttctaaatttaagtagatatattttcttgtttatctttacag |
112 |
Q |
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| T |
45160690 |
ctgtgatccatttttgttgggtatgtgattaacacaatttcatatgaaagttatcttgttctaaatttaagtagatatattttcttgtttatctctacag |
45160789 |
T |
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| Q |
113 |
gctgcgacatttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagagtggttttttgcagtacgtcgagttttgg |
212 |
Q |
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| T |
45160790 |
gctgcgacatttataattcataaaattttgttcgatgatgatggtttggcttacgtttgtgctacagcagagcggttttttgcagtacgtcgagttttgg |
45160889 |
T |
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| Q |
213 |
acatgatgttcgaaagtcttgataagcaacc |
243 |
Q |
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| T |
45160890 |
acatgatgttcgaaagtcttgacaagcaacc |
45160920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 24127576 - 24127346
Alignment:
| Q |
14 |
tgtgatccatttttgttgggtatgtgattaacacaatttcatatgaaagttatcttgttctaaatttaagtagatatattttcttgtttatctttacagg |
113 |
Q |
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| T |
24127576 |
tgtgttccatttttgttgggtatgtgattaacaccatttcatatgtaagttatcttgttctaaatttaagtatatatattttcttgtttatctctgtaga |
24127477 |
T |
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| Q |
114 |
ctgcgacatttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagagtggttttttgcagtacgtcgagttttgga |
213 |
Q |
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| T |
24127476 |
ctgcaacctttatattccagaaaattttgttcgatgatgatggtttggcctacgtttgtgctacagcagagcggttttttgcagtacgtcgagttttgga |
24127377 |
T |
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| Q |
214 |
catgatgttcgaaagtcttgataagcaacct |
244 |
Q |
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| T |
24127376 |
catgatgtccgaaagtcttgacaagcaacct |
24127346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 8722851 - 8722692
Alignment:
| Q |
85 |
agatatattttcttgtttatctttacaggctgcgacatttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagag |
184 |
Q |
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| T |
8722851 |
agatatattttcttgcttatctttgcagcttgcatcatttataattcagaaaattttgttagacgatgatggtttgccttacgtctgtgctacaacataa |
8722752 |
T |
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| Q |
185 |
tggttttttgcagtacgtcgagttttggacatgatgttcgaaagtcttgataagcaacct |
244 |
Q |
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| T |
8722751 |
tggttttttgcactacatcgagttttggatatgatgttcaaaaatcttgagaaggaacct |
8722692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 85 - 244
Target Start/End: Complemental strand, 9074738 - 9074579
Alignment:
| Q |
85 |
agatatattttcttgtttatctttacaggctgcgacatttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagag |
184 |
Q |
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| T |
9074738 |
agatatattttcttgcttatctttgcagcttgcatcatttataattcagaaaattttgttagacgatgatggtttgccttacgtctgtgctacaacataa |
9074639 |
T |
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| Q |
185 |
tggttttttgcagtacgtcgagttttggacatgatgttcgaaagtcttgataagcaacct |
244 |
Q |
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| T |
9074638 |
tggttttttgcactacatcgagttttggatatgatgttcaaaaatcttgagaaggaacct |
9074579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 8716558 - 8716390
Alignment:
| Q |
21 |
catttttgttgggtatgtgattaacacaatttcatatgaaagttatcttgttctaaatttaagtagatatattttcttgtttatctttacaggctgcgac |
120 |
Q |
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| T |
8716558 |
catttttgttgggtatgtgatcaacacaatttcatgtgaaagttatcttgttctaaattta---agatata-tttctttgttatctctgcaggtcgcaac |
8716463 |
T |
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| Q |
121 |
atttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagagtggtttttt |
193 |
Q |
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| T |
8716462 |
atttataattcataaaattttataagatgatgaagatttggtttacgtttgtgcaacaacatagcggtttttt |
8716390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 9068445 - 9068277
Alignment:
| Q |
21 |
catttttgttgggtatgtgattaacacaatttcatatgaaagttatcttgttctaaatttaagtagatatattttcttgtttatctttacaggctgcgac |
120 |
Q |
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| T |
9068445 |
catttttgttgggtatgtgatcaacacaatttcatgtgaaagttatcttgttctaaattta---agatata-tttctttgttatctctgcaggtcgcaac |
9068350 |
T |
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| Q |
121 |
atttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagagtggtttttt |
193 |
Q |
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| T |
9068349 |
atttataattcataaaattttataagatgatgaagatttggtttacgtttgtgcaacaacatagcggtttttt |
9068277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 5116757 - 5116644
Alignment:
| Q |
109 |
acaggctgcgacatttataattcataaaattatgttcgatgatgatggtttagcttacttttgtgctacagcagagtggttttttgcagtacgtcgagtt |
208 |
Q |
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| T |
5116757 |
acaggttgcaacatttataattctgaaaattatattagacgatgatggtttggctcgtgtttgtgctacaacagagaatttttttggagtatgtcgagtt |
5116658 |
T |
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| Q |
209 |
ttggacatgatgtt |
222 |
Q |
| |
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||| |||||||||| |
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| T |
5116657 |
ttgaacatgatgtt |
5116644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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