View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_13 (Length: 247)
Name: NF12396_low_13
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_13 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 34161424 - 34161194
Alignment:
| Q |
17 |
aagaataactccactacctttcctgccataccttcaattcaattatgttctaataatagactcttttatttgaagaatattcaccttctgggaagcttca |
116 |
Q |
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| T |
34161424 |
aagaataactccactacctttcctgccataatttcaattcaattatgttctaataatagactcttttatttgaagaatattcaccttctgggaagcttca |
34161325 |
T |
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| Q |
117 |
taaacaactcatttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacataaggaaaacacttagaggtaagggtatttc |
216 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34161324 |
taaacaactcacttcaccgtgcccaatttcgtggagttggctgtagaatctccacaaaataaaaacacataaggaaagcacttagaggtaagggtatttc |
34161225 |
T |
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| Q |
217 |
cccatactaatcatattagactaatggttag |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34161224 |
cccatactaatcatattagactaatggttag |
34161194 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 25673134 - 25673179
Alignment:
| Q |
202 |
aggtaagggtatttccccatactaatcatattagactaatggttag |
247 |
Q |
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||||||||| | |||| |||||| |||||||||||||||||||||| |
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| T |
25673134 |
aggtaagggcacttcctcatacttatcatattagactaatggttag |
25673179 |
T |
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