View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_18 (Length: 216)
Name: NF12396_low_18
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_18 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3314707 - 3314492
Alignment:
| Q |
1 |
tggtgttactgttagtgttaccgtttctgttactacttgcaccaccttgagagaaggttgacattattattattgttcaaatttcaacaaaacaaaaggt |
100 |
Q |
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| T |
3314707 |
tggtgttactgttagtgttaccgtttctgttactacttgcaccaccttgagagaaggttgacattattattattgttcaaatttcaacaaaacaaaaggt |
3314608 |
T |
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| Q |
101 |
ttggtttggtggttgattaaagaaaaaggacttgtttggttgatttgagaatatgaatatggcagttgagttcaacttcacttcttcattccgcaaccgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3314607 |
ttggtttggtggttgattaaagaaaaaggacttgtttggttgatttgagaatatgaatatggcagttgagttcaacttcacttcttcattccgcaaccgc |
3314508 |
T |
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| Q |
201 |
tacagatgtgactcac |
216 |
Q |
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|||||||||||||||| |
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| T |
3314507 |
tacagatgtgactcac |
3314492 |
T |
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