View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_19 (Length: 206)
Name: NF12396_low_19
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_19 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 7099022 - 7098836
Alignment:
| Q |
18 |
tgctagacatggaaaactgtaaaggaacaaatggatatccaagtattgttcataatcgtattgagatagacaaagaaaaaagatacataatttgaaaacc |
117 |
Q |
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| T |
7099022 |
tgctagacatggaaaactgtaaaggaacaaatgtatatccaagtattattcataatcgtattgagata--caaagaaaaaagatacataatttgaaaacc |
7098925 |
T |
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| Q |
118 |
ctaactaatgaattgctgagtaaagtttcaacttgttttgattaaactcagttttgtgttggcatcacagaaaaagaaactctaacctc |
206 |
Q |
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| T |
7098924 |
ctaactaatgaattgctgagtaaagtttcaacttgttttgattaaactcagttttgtgtcggcatcacagaaaaagaaactctaacctc |
7098836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 7091903 - 7091751
Alignment:
| Q |
18 |
tgctagacatggaaaactgtaaaggaacaaatggatatccaagtattgttcataatcgtattgagatagacaaagaaaaaagatacataatttgaaaacc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
7091903 |
tgctagacatggaaaactgtaaaggaacaaatggatatccaagtattattcataatcgtattgagataggcaaagaaaaaggatacataatttgaaaacc |
7091804 |
T |
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| Q |
118 |
ctaactaatgaattgctgagtaaagtttcaacttgttttgattaaactcagtt |
170 |
Q |
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| T |
7091803 |
ctaaataataaatttccgagtaaagtttcaacttgttttgattaaactcagtt |
7091751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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