View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12396_low_2 (Length: 733)
Name: NF12396_low_2
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 48 - 723
Target Start/End: Complemental strand, 52651941 - 52651270
Alignment:
| Q |
48 |
attgaatatcaggctgaaaatattaatttcataagagaaagcgatgtctcaacacatggttactataatcaaattcaaattcaacttaaaataaggaacc |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52651941 |
attgaatatcaggctgaaaatattaatttcataagagaaagcgatgtctcaacccatggttactataatcaaattcaaattaaacttaaaataaggaacc |
52651842 |
T |
|
| Q |
148 |
cacctcaaattagccttcaaaagtgc-tcaagactccccctttcctccaagccttcagcttctaacaacacccattcattattcatgttcaatacatgga |
246 |
Q |
| |
|
|||||||||||||||||| | | || || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52651841 |
cacctcaaattagccttccccctttcctccag-ctcttgttcaactccaagccttcagcttctaacaacacccattcattattcatgttcaatacatgga |
52651743 |
T |
|
| Q |
247 |
aaatcacacatgtaaggctttaattccatgtaattgaagaaattggaattgggtaaaatgggttaggttcggatttgagaggaagaaaagagggggagga |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52651742 |
aaatcacacatgtaaggctttaattccatgtaattgaagaaattgg------gtaaaatgggttaggttcggatttgagaggaagaaaagagggggagga |
52651649 |
T |
|
| Q |
347 |
aattcttttcacttaccttgcttccaatgagaaattaaagaggatgatgacacatgcaagctccaaggtgtcaaaaatgggagagaaacagcagaaaaga |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52651648 |
aattcttttcacttaccttgcttccaatgagaaattaaagaggaggatgacacatgcaagctccaaggtgtcaaaaatgggagagaaacagcagaaaaga |
52651549 |
T |
|
| Q |
447 |
gagagcagatcgcgagagaattttttctcaccnnnnnnnccactacttcagccccat--ggtaattaccattatgccactatttgtgaaaatgaccacta |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52651548 |
gagagcagatcgcgagagaattttttctcacccttttttccactacttcagccccatatggtaattaccattatgccactatttgtgaaaatgaccacta |
52651449 |
T |
|
| Q |
545 |
tattctttctttccattaaaatgactaatagcatgcatgtttgctttggcggtggatttttcacttcagctatggaaaaaccacgttggaggataagctt |
644 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52651448 |
tatcctttctttccattaaaatgactaatagcatgcatgtttgctttgaccgtggatttttcacttcagctatggaaaaaccacgttggaggagaagctt |
52651349 |
T |
|
| Q |
645 |
gtttttgcagcttctttaaatcacggtgaaaagtgcatcggaacgtgcaaataatactccaattgtgaatctaaacaca |
723 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
52651348 |
gtttttgcaccttctttaaatcacggtgaaaagtgcatcggaacgtgcaaatgatgctccaattgtgaatataaacaca |
52651270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 685
Target Start/End: Complemental strand, 34661662 - 34661607
Alignment:
| Q |
630 |
ttggaggataagcttgtttttgcagcttctttaaatcacggtgaaaagtgcatcgg |
685 |
Q |
| |
|
|||||||| ||||||| ||| | |||||||||||||||||||||||| ||| |||| |
|
|
| T |
34661662 |
ttggaggagaagcttgctttggtagcttctttaaatcacggtgaaaaatgcttcgg |
34661607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 10013664 - 10013799
Alignment:
| Q |
252 |
acacatgtaaggctttaa-ttccatgtaattgaagaaattggaattgggtaaaat--gggttaggttcggatttgagaggaagaaaagagggggaggaaa |
348 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10013664 |
acacatgtaaggctttaaattcaatgtaattgaagaaattggaattgggcaaaaatagggttaggttctgatttgagaggaagaaaagagggggaggaaa |
10013763 |
T |
|
| Q |
349 |
ttcttttcacttaccttgcttccaatgagaaattaa |
384 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10013764 |
tttttttcacttaccttgcttccaatgagaaattaa |
10013799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 10013233 - 10013262
Alignment:
| Q |
20 |
tcccattcctgcaatgtttagcaattccat |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
10013233 |
tcccattcctgcaatgtttagcaattccat |
10013262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 595 - 725
Target Start/End: Original strand, 3876633 - 3876762
Alignment:
| Q |
595 |
ggtggatttttcacttcagctatggaaaaaccacgttggaggataagcttgtttttgcagcttctttaaatcacggtgaaaagtgcatcggaacgtgcaa |
694 |
Q |
| |
|
|||| |||||||||||| || ||||||| | ||||||||||| ||||||| ||||||| |||||||||||||||||||||| | | || ||||| |||| |
|
|
| T |
3876633 |
ggtgaatttttcacttcggcggtggaaaatc-acgttggaggagaagcttgcttttgcaacttctttaaatcacggtgaaaaattcctcagaacgcgcaa |
3876731 |
T |
|
| Q |
695 |
ataatactccaattgtgaatctaaacacagg |
725 |
Q |
| |
|
|| || || | |||||||||| |||||||| |
|
|
| T |
3876732 |
atgatgcttctattgtgaatcctaacacagg |
3876762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 695
Target Start/End: Complemental strand, 36059494 - 36059419
Alignment:
| Q |
620 |
aaaaaccacgttggaggataagcttgtttttgcagcttctttaaatcacggtgaaaagtgcatcggaacgtgcaaa |
695 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| ||||||||||||||| ||||| || ||| |||| ||||||||| |
|
|
| T |
36059494 |
aaaagccacgttggaggaaaagctaccttttggagcttctttaaatcatggtgagaaatgcctcgggacgtgcaaa |
36059419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University