View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_3 (Length: 455)
Name: NF12396_low_3
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 439
Target Start/End: Complemental strand, 5441882 - 5441435
Alignment:
| Q |
12 |
cctgtgttacctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgggaaagatgtatatagacccttatgctt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5441882 |
cctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgggaaagatgtatatagacccttatgctt |
5441783 |
T |
|
| Q |
112 |
ggattaatgatgattattccaatgaaacacaatatcctgcacaggtacatatgcta--------------------ctatactataaatcatatgatggt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5441782 |
ggattaatgatgattattccaatgaaacacaatatcctgcacaggtacatatgctaattgttgtctagatgcatcactatactataaatcatatgatggt |
5441683 |
T |
|
| Q |
192 |
gattcttgtaagacttattgagattaatgcactagtgttattgatgtttaaggtcaaagttcgtgttggacttcaatgtcgtccgttaaccgaagataaa |
291 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5441682 |
gattcttgtaagacttattgagattaatgccctagtgttattgatgtttaaggtcaaagttcgtgttggacttcaatgtcgtccattaaccgaagataaa |
5441583 |
T |
|
| Q |
292 |
tttagacaagcaattgcagggaactactatgataataaccattttaggtttgaactagatcgtagtcaaacaaacaaactaatgtttttacttacttctg |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||||| |
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| T |
5441582 |
tttagacaagcaattgcagggaactactatgataataaccattttaggtttgaattagaccgtagtcaaacaaataagctaatgtttttacttacttctg |
5441483 |
T |
|
| Q |
392 |
cggcaatagctcctggtacacctgtaccacggtataatatgaattgga |
439 |
Q |
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| T |
5441482 |
cggcaatagctcctggtacacctgtaccacggtataatatgaattgga |
5441435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 3855967 - 3856104
Alignment:
| Q |
21 |
cctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgggaaagatgtatatagacccttatgcttggattaatg |
120 |
Q |
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||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
3855967 |
cctttgtttctattcaattatactgatagaaagcttcatgggatttttgaggcatctagcaagggaaaaatgtatatagacccttatgcatggattaatg |
3856066 |
T |
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| Q |
121 |
atgattattccaatgaaacacaatatcctgcacaggta |
158 |
Q |
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| T |
3856067 |
atgattattccgacgaaacacaatatcctgcacaggta |
3856104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 3864724 - 3864861
Alignment:
| Q |
21 |
cctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgggaaagatgtatatagacccttatgcttggattaatg |
120 |
Q |
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||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
3864724 |
cctttgtttctattcaattatactgatagaaagcttcatgggatttttgaggcatctagcaagggaaaaatgtatatagacccttatgcatggattaatg |
3864823 |
T |
|
| Q |
121 |
atgattattccaatgaaacacaatatcctgcacaggta |
158 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||| |
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| T |
3864824 |
atgattattccgacgaaacacaatatcctgcacaggta |
3864861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 439
Target Start/End: Original strand, 3856215 - 3856416
Alignment:
| Q |
238 |
tttaaggtcaaagttcgtgttggacttcaatgtcgtccgttaaccgaagataaatttagacaagcaattgcagggaactactatgataataaccatttta |
337 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| || || |||||| | |||||| ||||| |||||||||||| |
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| T |
3856215 |
tttaaggtaaaagttcgtgtcggacttcaatgtcgcccgttgtccgaagataaatttgaacgagtaattgcggagaactattatgacaataaccattttt |
3856314 |
T |
|
| Q |
338 |
ggtttgaactagatcgtagtcaaacaaacaaactaatgtttttacttacttctgcggcaatagctcctggtacacctgtaccacggtataatatgaattg |
437 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||| |||||| | ||| | |||||||||||| |||| |||||| || ||||||| ||| || |
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| T |
3856315 |
ggtttgaactagaccgtagtcaaacaaccaagctaatgtatttactcgcgtctacaccaatagctcctgatacatatgtaccgcgatataatacgaaatg |
3856414 |
T |
|
| Q |
438 |
ga |
439 |
Q |
| |
|
|| |
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|
| T |
3856415 |
ga |
3856416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 439
Target Start/End: Original strand, 3864972 - 3865173
Alignment:
| Q |
238 |
tttaaggtcaaagttcgtgttggacttcaatgtcgtccgttaaccgaagataaatttagacaagcaattgcagggaactactatgataataaccatttta |
337 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| || || |||||| | |||||| ||||| |||||||||||| |
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| T |
3864972 |
tttaaggtaaaagttcgtgtcggacttcaatgtcgcccgttgtccgaagataaatttgaacgagtaattgcggagaactattatgacaataaccattttt |
3865071 |
T |
|
| Q |
338 |
ggtttgaactagatcgtagtcaaacaaacaaactaatgtttttacttacttctgcggcaatagctcctggtacacctgtaccacggtataatatgaattg |
437 |
Q |
| |
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||||||||||||| ||||||||||||| ||| ||||||| |||||| | ||| | |||||||||||| |||| |||||| || ||||||| ||| || |
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| T |
3865072 |
ggtttgaactagaccgtagtcaaacaaccaagctaatgtatttactcgcgtctacaccaatagctcctgatacatatgtaccgcgatataatacgaaatg |
3865171 |
T |
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| Q |
438 |
ga |
439 |
Q |
| |
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|| |
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|
| T |
3865172 |
ga |
3865173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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