View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12396_low_5 (Length: 406)
Name: NF12396_low_5
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12396_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 38777308 - 38777679
Alignment:
| Q |
14 |
caaaaacatctgtaatcctttaaattttaatttaatcctaacttgattgttaaggtttctcatgtcatgtcaagtttaacatattgtgtgtcgtgtacca |
113 |
Q |
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| T |
38777308 |
caaaaacatctgtaatcctttaaattttaatttaatcctaacttgattgttatggtttctcatgtcatgtcaagtttaacatattgtgtgtcgtgtacca |
38777407 |
T |
|
| Q |
114 |
cattagtgtaattgatctaccctaacgtagtaagtctgctaatcgatcgagtattgagctaataaattaggacgttgggcaaccaaattaatggataagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38777408 |
cattagtgtaattgatctaccctaacgtagtaagtctgctaatcgatcgagtattgagctaataaattaggacgttgggcaaccaaattaatggataagc |
38777507 |
T |
|
| Q |
214 |
cgctaatcctttcactaggaaaggagaaaacatgacaagatggtttcggatgaccgacagagtggtaaggagtttgaatacgtggccccattacccatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38777508 |
cgctaatcctttcactaggaaaggagaaaacatgacaagatggtttcggatgaccgacagagtggtaaggagtttgaatatgtggccccattacccatat |
38777607 |
T |
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| Q |
314 |
ggccaaaggcacaagccccgtgaggaggttcgttcactttctatacaaggagcctgccttaccctgttttgg |
385 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38777608 |
ggccaaaggcacaagccccgtgaggaggctcgttcactttctatacaaggagcctgccttaccctgttttgg |
38777679 |
T |
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