View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12396_low_8 (Length: 335)

Name: NF12396_low_8
Description: NF12396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12396_low_8
NF12396_low_8
[»] chr6 (3 HSPs)
chr6 (1-319)||(22208007-22208325)
chr6 (42-83)||(21877295-21877336)
chr6 (30-99)||(33362850-33362919)
[»] chr3 (6 HSPs)
chr3 (1-213)||(48099962-48100185)
chr3 (1-115)||(20620074-20620188)
chr3 (6-187)||(24638853-24639045)
chr3 (6-115)||(24647782-24647891)
chr3 (220-322)||(48101262-48101364)
chr3 (126-182)||(20619996-20620052)
[»] chr8 (2 HSPs)
chr8 (16-214)||(23583534-23583743)
chr8 (220-322)||(23582422-23582524)
[»] chr1 (3 HSPs)
chr1 (1-213)||(9932680-9932903)
chr1 (1-214)||(44386861-44387085)
chr1 (220-322)||(9933980-9934082)
[»] scaffold0009 (1 HSPs)
scaffold0009 (3-108)||(31496-31601)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 22208007 - 22208325
Alignment:
Q  1 cggtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  22208007 cggtgcaaggggtatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatactgcaaggctcctgcaagactccg 22208106  T
Q  101 atacaaggtgggatctaccgacagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctgtgcgggaaataat 200  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  22208107 atacaaggtgtgatctaccgacagaggtactgagcttttgtttggtgtcaattggagtagtagaaggtttgcacgaggcgatgcctgtgcgggcaataat 22208206  T
Q  201 ttcaccagcatagggattatgtctcatcaaatatgacatgttgggaaacgatgatctttccatgcaacaaatcaaaacattcgtagactttgtggttagt 300  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||| |||||    
T  22208207 ttcaccagcatagggattgtgtctcattaaatatgacatgttgggaaacgatgatctttctgtgcaacaaatcaaaacatttttagactttgtgattagt 22208306  T
Q  301 gggataccctaagaagaca 319  Q
    |||||||||||||||||||    
T  22208307 gggataccctaagaagaca 22208325  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 21877295 - 21877336
Alignment:
Q  42 acataagagatgtcaggatgggtgaaagtaagatattgcaag 83  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  21877295 acataagagatatcaggccgggtgaaagtaagatattgcaag 21877336  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 33362850 - 33362919
Alignment:
Q  30 acctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttc 99  Q
    |||||||||||  ||||||||||||||||  | ||||| |||||||||||||  || || ||||||||||    
T  33362850 acctgttgaacggcataagagatgtcaggtcgtgtgaaggtaagatattgcagtgcaccagcaagacttc 33362919  T

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Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 48099962 - 48100185
Alignment:
Q  1 cggtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcg 100  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||    
T  48099962 cggtgcaaggggcatgcatgtgaagacacacctgctgaacaacataagaaatgtcaggacgggtgaaagtaagatactgcaaggctcctgcaagactccg 48100061  T
Q  101 atacaaggtgggatc-----------taccgacagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctgtg 189  Q
    ||| |||||||| ||           | ||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |    
T  48100062 atataaggtggggtcatcgtatggagtgccagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcg 48100161  T
Q  190 cgggaaataatttcaccagcatag 213  Q
    |||| ||| ||||||||| |||||    
T  48100162 cgggcaatgatttcaccaacatag 48100185  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 20620188 - 20620074
Alignment:
Q  1 cggtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcg 100  Q
    |||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||  |||||||||||||||| | ||||| |||||||||||||||    
T  20620188 cggtgcaaggggcatgcatgtgaagacacatctgttggccaacataagagatgtcaggtcgggtgaaagtaagatacttcaaggatcctgcaagacttcg 20620089  T
Q  101 atacaaggtgggatc 115  Q
    ||| || ||||||||    
T  20620088 atataaagtgggatc 20620074  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 24638853 - 24639045
Alignment:
Q  6 caaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcgataca 105  Q
    ||||||||||||||| | ||| |||||||  | ||||||||||||||||||||  |||||||||||||||| || ||| ||||||||||||| |||||      
T  24638853 caaggggcatgcatgcgtagacacacctgccggacaacataagagatgtcaggccgggtgaaagtaagatactggaagactcctgcaagactccgatatc 24638952  T
Q  106 aggtgggatc-----------taccgacagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctg 187  Q
    ||||||||||           |  |  | | |||||||||||||||  |||||||||||||||||| |||||||||||| ||| |||||||||    
T  24638953 aggtgggatcatcgtatgaagtgtcagcggtggtactgagcttctgcgtggtgtcaactggagtagcagaaggtttgcatgaggccatgcctg 24639045  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 24647782 - 24647891
Alignment:
Q  6 caaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcgataca 105  Q
    ||||||||||||||| ||||| |||||||  | ||||||||||||||||||||  |||||||| ||||||| || ||| ||||||||||||| |||||      
T  24647782 caaggggcatgcatgcgaagacacacctgccggacaacataagagatgtcaggccgggtgaaattaagatactggaagactcctgcaagactccgatatc 24647881  T
Q  106 aggtgggatc 115  Q
    ||||||||||    
T  24647882 aggtgggatc 24647891  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 48101262 - 48101364
Alignment:
Q  220 tgtctcatcaaatatgacatgttgggaaacgatgatctttccatgcaacaaatcaaaacattcgtagactttgtggttagtgggataccctaagaagaca 319  Q
    |||||||||||||||||||||  |||| |  ||||||||||  ||| ||||||||||||||| |||  || |||| ||||||||||||||||||||||||    
T  48101262 tgtctcatcaaatatgacatgccgggagataatgatctttctgtgcgacaaatcaaaacatttgtatcctctgtgattagtgggataccctaagaagaca 48101361  T
Q  320 cac 322  Q
    |||    
T  48101362 cac 48101364  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 20620052 - 20619996
Alignment:
Q  126 ggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccat 182  Q
    ||||||||||||||||||||||||||||| ||||| | ||||||  |||||| ||||    
T  20620052 ggtactgagcttctgtttggtgtcaactgtagtagcaaaaggttcacacgaggccat 20619996  T

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Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 23583743 - 23583534
Alignment:
Q  16 gcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcgatacaaggtgggatc 115  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||  ||||||||| |||||||||||||||    
T  23583743 gcatgtgaagacacacctgttgaacaacataagagatgtgaggacgggtgaaagtaagatactgcaaggctcccacaagacttcaatacaaggtgggatc 23583644  T
Q  116 -----------taccgacagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctgtgcgggaaataatttca 204  Q
               | |||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  23583643 gtcgtatggagtgccgatagaggtaacgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgaggccatgcctgctcgggcaataatttca 23583544  T
Q  205 ccagcatagg 214  Q
    ||||| ||||    
T  23583543 ccagcgtagg 23583534  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 23582524 - 23582422
Alignment:
Q  220 tgtctcatcaaatatgacatgttgggaaacgatgatctttccatgcaacaaatcaaaacattcgtagactttgtggttagtgggataccctaagaagaca 319  Q
    |||||||||||||||||||||| |||||||||||||||||| |||  ||||||||||||||| |||  || |||| ||| | ||||||||||||||||||    
T  23582524 tgtctcatcaaatatgacatgtcgggaaacgatgatctttctatgggacaaatcaaaacatttgtaacctctgtgattaattggataccctaagaagaca 23582425  T
Q  320 cac 322  Q
    |||    
T  23582424 cac 23582422  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 9932680 - 9932903
Alignment:
Q  1 cggtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcg 100  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||| || |||||| |||||||||||||||| |||||||||||||||||||| ||    
T  9932680 cggtgcaaggggcatgcatgtgaatacacacctgctgaacagcataagaaatatcaggacgggtgaaagtaagatactgcaaggctcctgcaagactccg 9932779  T
Q  101 atacaaggtgggatc----taccga-------cagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctgtg 189  Q
    ||| |||||||| ||    ||  ||       | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |    
T  9932780 atataaggtggggtcatcatatggagtgtcagcggaggtactgagcttctgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgcg 9932879  T
Q  190 cgggaaataatttcaccagcatag 213  Q
    |||| ||| |||||||||||||||    
T  9932880 cgggcaatgatttcaccagcatag 9932903  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 44387085 - 44386861
Alignment:
Q  1 cggtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcg 100  Q
    |||||||| |||| |||||||||||| |||||||||| ||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  44387085 cggtgcaaagggcgtgcatgtgaagacacacctgttggacaacataagatatgtcaggtcgggtgaaagtaagatactgcaaggctcctgcaagacttcg 44386986  T
Q  101 atacaaggtgggatc-----------taccgacagaggtactgagcttctgtttggtgtcaactggagtagtagaaggtttgcacgagtccatgcctgtg 189  Q
    ||| || ||||||||           | ||| | | |||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||      
T  44386985 atataaagtgggatcgtcatatgaagtgccggcggtggtactgagcttttgtttggtgtcaactggagtagcagaaggtttgcacgaggccatgcctgct 44386886  T
Q  190 cgggaaataatttcaccagcatagg 214  Q
    || | |||||| |||| ||||||||    
T  44386885 cgagcaataatatcactagcatagg 44386861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 9933980 - 9934082
Alignment:
Q  220 tgtctcatcaaatatgacatgttgggaaacgatgatctttccatgcaacaaatcaaaacattcgtagactttgtggttagtgggataccctaagaagaca 319  Q
    |||||||||||||||||||||  |||| |  ||||||||||  ||| ||||||||||||||| |||  || |||| ||||||||||||||||||||||||    
T  9933980 tgtctcatcaaatatgacatgccgggagataatgatctttctgtgcgacaaatcaaaacatttgtatcctctgtgattagtgggataccctaagaagaca 9934079  T
Q  320 cac 322  Q
    |||    
T  9934080 cac 9934082  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 31601 - 31496
Alignment:
Q  3 gtgcaaggggcatgcatgtgaagatacacctgttgaacaacataagagatgtcaggatgggtgaaagtaagatattgcaaggctcctgcaagacttcgat 102  Q
    |||| ||||||||||||||||||| | || || |||||| |||| || |||||||| || ||||| || ||||| || | ||| ||||||||||| ||||    
T  31601 gtgcgaggggcatgcatgtgaagacaaacttgctgaacagcataggatatgtcaggttgagtgaaggtgagatactgtagggcccctgcaagactccgat 31502  T
Q  103 acaagg 108  Q
    ||||||    
T  31501 acaagg 31496  T

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