View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12397_high_5 (Length: 256)
Name: NF12397_high_5
Description: NF12397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12397_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 21467380 - 21467143
Alignment:
| Q |
19 |
gcattgtaagagaagacaagaaactatgtaaatcaccagaaagagagttgttacttagattcaacatttgaagttctttgcaatttccaatctctaacgg |
118 |
Q |
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| T |
21467380 |
gcattgtaagagaagacaagaaactatgtaaatcaccagaaagagagttgttacttagattcagcatttgaagttctttgcaatttccaatctctaacgg |
21467281 |
T |
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| Q |
119 |
catcgaaccactaagatgattttcagaaagatcaaggaaattaaggttgttaagaaaccctatttctcttggtatctcaccactgattctgttatctaaa |
218 |
Q |
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| T |
21467280 |
caccgaaccactaagatgattttcagaaagatcaaggaaattaaggttgttaagaaaccctatttctcttggtatctcaccactgattctgttatctaaa |
21467181 |
T |
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| Q |
219 |
agccggagtcgaatcagagaactacagttaccaatctc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21467180 |
agccggagtcgaatcagagaactacagttaccaatctc |
21467143 |
T |
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