View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12397_low_1 (Length: 636)
Name: NF12397_low_1
Description: NF12397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12397_low_1 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 324 - 626
Target Start/End: Complemental strand, 25288095 - 25287793
Alignment:
| Q |
324 |
aatttaggttactttgtattgtgttataggtacatagggatcaagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataatta |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25288095 |
aatttaggttactttgtattgtgttataggtacaaagggatcaagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataatta |
25287996 |
T |
|
| Q |
424 |
gttattgttgcagcacttttgatggaaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtctt |
523 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25287995 |
gttattgttgtagcacttttgatggaaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtctt |
25287896 |
T |
|
| Q |
524 |
ttgcttgtgccgaagtcgagagtactagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaaccacaggt |
623 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25287895 |
ttgcttgtgctgaagtcgagagtactagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagatacacaagcttctaaaccacaggt |
25287796 |
T |
|
| Q |
624 |
tct |
626 |
Q |
| |
|
||| |
|
|
| T |
25287795 |
tct |
25287793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 5198948 - 5198665
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5198948 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5198851 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5198850 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
5198751 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198750 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
5198665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 33 - 312
Target Start/End: Original strand, 15602905 - 15603183
Alignment:
| Q |
33 |
tgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaa |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || | || ||||||||||| ||| ||||||||| | ||||||||||||||| |||| ||| |||||| |
|
|
| T |
15602905 |
tgagaggaaaaatatagaaagaaaaattagatttttctatgaggtttctcttagtaagtgttagt--tagtattctcctatttacaagatagaatggtaa |
15603002 |
T |
|
| Q |
133 |
ttgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgagg |
232 |
Q |
| |
|
|||||| |||| || | ||||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15603003 |
ttgtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgagg |
15603102 |
T |
|
| Q |
233 |
ggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
312 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
15603103 |
ggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataatattttcttactct |
15603183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 161 - 323
Target Start/End: Original strand, 825632 - 825796
Alignment:
| Q |
161 |
tcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaa-tattgtgtgttc |
258 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
259 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
825796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 55 - 313
Target Start/End: Original strand, 28715816 - 28716067
Alignment:
| Q |
55 |
aaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttaga |
154 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||||| | ||||| |
|
|
| T |
28715816 |
aaaaatagtttctcttgtaaggtttctcctaggtagtgttagt------attctcctatttataggaaacggtggtaattgtactctccttgcatttaga |
28715909 |
T |
|
| Q |
155 |
gagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
254 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||||| |||| | |||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28715910 |
gagatgtcctgtaatttcttccactttgtgaaagttctctattcttctcttgtggtttt-tccccttatttaatgaggggtttccacgtaaatattgtgt |
28716008 |
T |
|
| Q |
255 |
gttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
313 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
28716009 |
gttcaattcctcttttgtcgtctcttattttaaatgtgtgataatattttgttactctg |
28716067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 161 - 324
Target Start/End: Original strand, 830288 - 830453
Alignment:
| Q |
161 |
tcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttttt-ccccttatttgttgaggggtttccacgtaaa-tattgtgtgttc |
258 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
259 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaacaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaacaa |
830453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 31 - 313
Target Start/End: Complemental strand, 30397191 - 30396921
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||||| |||||||||| |||| ||||||||||||| || | |||| ||| |
|
|
| T |
30397191 |
agtgagaggaacaatatagagaggaaatatagtttctcctgtgagatttctcctag----------tgttaatattctcctatttc-aacatagag-ggt |
30397104 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaa-gttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| ||||||||||| |||| ||||||| |||||||| ||||||||||||||| |||||||||||| ||| ||| |||||| ||||||||||||| |
|
|
| T |
30397103 |
aatttgtctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttcccttatttgttg |
30397004 |
T |
|
| Q |
230 |
aggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
313 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30397003 |
aggggtttcaacgaaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctg |
30396921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 830200 - 830291
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830200 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 825544 - 825635
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825544 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgcgaggtttctcctaggtagtgttagtgtttgtattctcct |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 13844014 - 13843865
Alignment:
| Q |
104 |
attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttacc |
203 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||| ||| | || ||||||||||||| ||||||||| ||||| |||| |||| ||| | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
204 |
ccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgt |
254 |
Q |
| |
|
| | ||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13843914 |
ctataattttt-ctccttatttgttgaggggtttccacgtaaatattgtgt |
13843865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 31593053 - 31592910
Alignment:
| Q |
179 |
ttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaat-attgtgtgttcagttcctcttttctcgtct |
277 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| | |||||| ||||| | ||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
31593053 |
ttagtgaaagttctctactcttatct-gtggttttttttc-ttatttattgagagatttccacgtaaattattgtatgttatgttcctcttttctcgtct |
31592956 |
T |
|
| Q |
278 |
cttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|||||| || ||| ||||||||||| ||||||| || |||| |||| |
|
|
| T |
31592955 |
cttattctatctgtgtgataatattatgttactttgatacccaaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 13840456 - 13840240
Alignment:
| Q |
102 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactctta |
201 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||| |||| || ||| || ||||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaatttttt-tacttggtaaaaattttctactcttg |
13840358 |
T |
|
| Q |
202 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
301 |
Q |
| |
|
| || || |||| |||||| |||||||||| || || |||||||| ||||||| ||||||| |||||| ||| ||||| || | ||||||||||| |
|
|
| T |
13840357 |
ctccatg--ttttcccccttgtttgttgaggaattctcatgtaaatat--tgtgttcggttcctcctttctcatcttttattataattacgtgataatat |
13840262 |
T |
|
| Q |
302 |
tttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||| |||| |||| |||| |
|
|
| T |
13840261 |
tttgttattctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 96 - 229
Target Start/End: Original strand, 8004161 - 8004292
Alignment:
| Q |
96 |
gtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctcta |
195 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||||| | |||||| ||||| | |||||||||| |||| |
|
|
| T |
8004161 |
gtgttagtattctcctatttataagagagagt-gtaattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttcta |
8004259 |
T |
|
| Q |
196 |
ctcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|| |||||||| | ||||||| ||||||||||| |
|
|
| T |
8004260 |
gtcataccccgttg-tttttcctcttatttgttg |
8004292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 12175860 - 12175768
Alignment:
| Q |
211 |
tttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattt |
303 |
Q |
| |
|
||||| || |||||| ||||| |||||||| |||||||||||||||| || || |||| || ||| ||||||||| ||||||||||||||| |
|
|
| T |
12175860 |
ttttttccattatttattgagatgtttccacaaaaatattgtgtgttcaatttcttttttatcatcttttattttagttgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 42117825 - 42117876
Alignment:
| Q |
211 |
tttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagtt |
262 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
42117825 |
tttttccccttattaattgagaggtttctacgtaaatattgtatgttcagtt |
42117876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 9358207 - 9358158
Alignment:
| Q |
259 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
308 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
9358207 |
agttcttcttttctcgtctgttgttttagctgcgtaataatatttggtta |
9358158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 27879013 - 27878709
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27879013 |
cttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
27878914 |
T |
|
| Q |
120 |
gagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttcccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27878913 |
gagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttcccc |
27878814 |
T |
|
| Q |
220 |
ttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacc |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27878813 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
27878714 |
T |
|
| Q |
319 |
taaca |
323 |
Q |
| |
|
||||| |
|
|
| T |
27878713 |
taaca |
27878709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 324
Target Start/End: Original strand, 1234725 - 1235019
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
1234725 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
1234822 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1234823 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
1234922 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaacaa |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1234923 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacaa |
1235019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 26976424 - 26976131
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
26976424 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
26976327 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
26976326 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccttggttttttccccttatttgtt |
26976227 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26976226 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 27874283 - 27873990
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27874283 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
27874186 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
27874185 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgtt |
27874086 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27874085 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagatgcgtgataatattttgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 47 - 323
Target Start/End: Original strand, 30986552 - 30986829
Alignment:
| Q |
47 |
tagagagaaa-aattagtttctcctg-tgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctcct |
144 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30986552 |
tagagagaaagaaatagtttctcctcatgaggtttctcctaggtagtgtcagt------attcttctatttacaagagagagtggtaattgtactctcct |
30986645 |
T |
|
| Q |
145 |
tgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtgg--ttttttccccttatttgttgagggg---tttcc |
239 |
Q |
| |
|
|| | |||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||| |
|
|
| T |
30986646 |
tgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttgccccgtggttttttttttccttatttgttgaggggtactttcc |
30986745 |
T |
|
| Q |
240 |
acgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
30986746 |
acgtaaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtgataatattttgttactctgatacctaaca |
30986829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 31 - 323
Target Start/End: Original strand, 18967912 - 18968194
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||| |||| |||||||||||||| | ||||||| | | |
|
|
| T |
18967912 |
agtgagaggaaaaatataaagaggaaatatagtttctcttgtgaggtttctcctag----------tgttagtattctcctatttc-atgagagag-gct |
18967999 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18968000 |
aatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttccccttatttgttg |
18968099 |
T |
|
| Q |
230 |
aggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18968100 |
aggggtttccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
18968194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 30966683 - 30966923
Alignment:
| Q |
34 |
gagaggaaaaatatagagagaaa-aattagtttctcct-gtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggta |
131 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| | ||| ||||| ||||||| |||||||||||||| |
|
|
| T |
30966683 |
gagagaaaaaatatagagagaaagaaatagtttctacttgtgaggtttctcctaggtagcctcagt------attcttctatttacaagagagagtggta |
30966776 |
T |
|
| Q |
132 |
attgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttt-ttccccttatttgttga |
230 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||| |||| || |||||||||||||| |
|
|
| T |
30966777 |
attgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttgccccgtgattttatttcccttatttgttga |
30966876 |
T |
|
| Q |
231 |
ggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966877 |
tgggtttccacgtaaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 449 - 615
Target Start/End: Original strand, 29736614 - 29736777
Alignment:
| Q |
449 |
aaaagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtac |
548 |
Q |
| |
|
||||||||| ||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||| | | |
|
|
| T |
29736614 |
aaaagaaatgtgattccatctttgtgctataggcttctgaagatgctaaaaagttggttaatcaagagcagtcttttgcttgtgccgaaatcgagaatgc |
29736713 |
T |
|
| Q |
549 |
tagagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaa |
615 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29736714 |
tagagcagtggtgctgagatttggggaggcacttgaag---aagaaaaagttacacaagcttctaaa |
29736777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 21966677 - 21966852
Alignment:
| Q |
133 |
ttgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgagg |
232 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||| ||||| |||||||||||||||||||||| |||| | | |||||||| |||||| |||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccat-gatttttccctttatttattgagg |
21966775 |
T |
|
| Q |
233 |
ggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
310 |
Q |
| |
|
||||||||| |||||||| | |||| ||||||||||||||| | | ||| ||||||||||||||||| ||| |||||| |
|
|
| T |
21966776 |
ggtttccacataaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttact |
21966852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 176 - 324
Target Start/End: Complemental strand, 23012647 - 23012499
Alignment:
| Q |
176 |
cacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctttt-ctcg |
274 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| ||| | |||||| || | ||||||||||||||| |||||||||| ||| |||||| |||| |
|
|
| T |
23012647 |
cacttagtgaaagttctctactcttgccca-tggtttttccccttaatttgt-gacgagtttccacgtaaataatgtgtgttcaattcttctttttctcg |
23012550 |
T |
|
| Q |
275 |
tctcttattttagctgcgtgataata-ttttgttactctgttacctaacaa |
324 |
Q |
| |
|
||||||||||||| |||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
23012549 |
tctcttattttagttgcgtgataatattttttttactttgttacccaacaa |
23012499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 30967674 - 30967725
Alignment:
| Q |
272 |
tcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaaca |
30967725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 54545897 - 54546200
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545897 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
54545996 |
T |
|
| Q |
120 |
gagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttcccc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54545997 |
gagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatccacttagtgaaagttctctactctagccccgtggttttttcccc |
54546096 |
T |
|
| Q |
220 |
ttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54546097 |
ttatttgttgaggggtttccacgtaaatattgtatgttcagttcctcttttctcatctcttattttagctgcgtgataatattttgttactctggtacct |
54546196 |
T |
|
| Q |
320 |
aaca |
323 |
Q |
| |
|
|||| |
|
|
| T |
54546197 |
aaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 5823568 - 5823275
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5823568 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5823471 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5823470 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
5823371 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5823370 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
5823275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 5818806 - 5818513
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5818806 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
5818709 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
5818708 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttattagtt |
5818609 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5818608 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 2817486 - 2817263
Alignment:
| Q |
102 |
gtattctcctatttataagagagag--tggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactct |
199 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| || |||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
2817486 |
gtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgagagttctttactct |
2817387 |
T |
|
| Q |
200 |
taccccgtggttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataa |
298 |
Q |
| |
|
| ||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2817386 |
tgccctgtggttttttccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataa |
2817288 |
T |
|
| Q |
299 |
tattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| ||||||||| |
|
|
| T |
2817287 |
tattttgttactctggtacctaaca |
2817263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 173 - 323
Target Start/End: Complemental strand, 24659285 - 24659136
Alignment:
| Q |
173 |
ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttc |
271 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
24659285 |
ttccacttagtgaaagttct--actcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctcttttc |
24659188 |
T |
|
| Q |
272 |
tcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
24659187 |
tcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 4579254 - 4579358
Alignment:
| Q |
210 |
ttttttccccttatttgttgaggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4579254 |
ttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgtta |
4579353 |
T |
|
| Q |
309 |
ctctg |
313 |
Q |
| |
|
||||| |
|
|
| T |
4579354 |
ctctg |
4579358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 31204936 - 31204781
Alignment:
| Q |
154 |
agagaggtcctgtaattttttccacttagtgaaagttctctactcttacc-ccgtggttttttccccttatttgttgaggggtttccacgtaaatattgt |
252 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31204936 |
agagaggttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctcttatttgttgaggggtttccacgtaaatattgt |
31204837 |
T |
|
| Q |
253 |
gtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
309 |
Q |
| |
|
| |||||||||||||||| || |||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
31204836 |
gagttcagttcctctttt-tcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 129 - 285
Target Start/End: Original strand, 35977103 - 35977258
Alignment:
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttc-tctactcttaccccgtggttttttccccttatttgt |
227 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||||| || | ||||||| || ||| |||||||| ||| ||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaaactcttttactcttgccaagtgagtttttccc--tatatgt |
35977200 |
T |
|
| Q |
228 |
tgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttatttt |
285 |
Q |
| |
|
||| || ||| ||||||||||||| |||||| || |||||||||| |||||||||| |
|
|
| T |
35977201 |
tgatggttttttacgtaaatattgtttgttcaatttctcttttctcacctcttatttt |
35977258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 24671301 - 24671173
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||| |
|
|
| T |
24671301 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcc----------tagtgttagtattctcctattt-caagagagag-ggt |
24671214 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaattt |
171 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
24671213 |
aatttgtctctccttgtatttagagagaagtcttgtaattt |
24671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 4579126 - 4579177
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctc |
82 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
4579126 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctc |
4579177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 36420132 - 36420220
Alignment:
| Q |
221 |
tatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttac |
309 |
Q |
| |
|
|||||||||| | |||||||||||||||| ||||| |||| | ||||||| |||| ||||||| || | ||||||||||||||||| |
|
|
| T |
36420132 |
tatttgttgaaagatttccacgtaaatattatgtgtgttgttctttttttctcatctcatattttaactacatgataatattttgttac |
36420220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 30945780 - 30945477
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945780 |
cttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
30945681 |
T |
|
| Q |
120 |
gagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttcccc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
30945680 |
gagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtgatttttt-ccc |
30945582 |
T |
|
| Q |
220 |
ttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacc |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30945581 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctgatacc |
30945482 |
T |
|
| Q |
319 |
taaca |
323 |
Q |
| |
|
||||| |
|
|
| T |
30945481 |
taaca |
30945477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 30950486 - 30950183
Alignment:
| Q |
20 |
cttagtagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950486 |
cttagtagaatagagagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataa |
30950387 |
T |
|
| Q |
120 |
gagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttcccc |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
30950386 |
gagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttt-ccc |
30950288 |
T |
|
| Q |
220 |
ttatttgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacc |
318 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30950287 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttatcttattttagctgcgtgataatattttgttactctggtacc |
30950188 |
T |
|
| Q |
319 |
taaca |
323 |
Q |
| |
|
||||| |
|
|
| T |
30950187 |
taaca |
30950183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 48702114 - 48701821
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48702114 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
48702017 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48702016 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
48701917 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48701916 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
48701821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 42265927 - 42266220
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42265927 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
42266024 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42266025 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
42266124 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
42266125 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaaca |
42266220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 42270646 - 42270939
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42270646 |
atagtgagagaaaaaatatagagaggaaaaatagcttctcctgtgaggtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtg |
42270743 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42270744 |
gtaattgtactctccttgtatttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
42270843 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
42270844 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtatctaaca |
42270939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 313
Target Start/End: Complemental strand, 24520318 - 24520035
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
24520318 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
24520221 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24520220 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
24520121 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctg |
313 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24520120 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctg |
24520035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 29 - 324
Target Start/End: Complemental strand, 48697425 - 48697130
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
48697425 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
48697328 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtt-ttttccccttatttgt |
227 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
48697327 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgt |
48697228 |
T |
|
| Q |
228 |
tgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaacaa |
324 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48697227 |
tgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgataatattttgttactctggtacctaacaa |
48697130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 31 - 323
Target Start/End: Original strand, 10427315 - 10427597
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
10427315 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
10427402 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||| |||||| || |||||| ||||||||||||||||||||| |
|
|
| T |
10427403 |
aatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttatctactttttccccgtagttttttccccttatttgttg |
10427502 |
T |
|
| Q |
230 |
aggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
10427503 |
aggggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattctgttactctggtacctaaca |
10427597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 116 - 310
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
116 |
ataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttttt |
215 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||| | |||||| ||||||||||||||||||||| ||| || ||||| |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg--ttttt |
48782936 |
T |
|
| Q |
216 |
ccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttact |
310 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
48782937 |
ccctttatttgttgagaaatttccacgtaaatattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 17248011 - 17248112
Alignment:
| Q |
169 |
ttttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctctt |
268 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| || |||||||||||||||||||| || |||| |||||| ||||||||||||| || |||| ||||| |
|
|
| T |
17248011 |
ttttttccacttaatgaaagttctatactcttatccggtggttttttccccttatttattaagggatttccatgtaaatattgtgtatttagtttctctt |
17248110 |
T |
|
| Q |
269 |
tt |
270 |
Q |
| |
|
|| |
|
|
| T |
17248111 |
tt |
17248112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 216
Target Start/End: Original strand, 1979269 - 1979391
Alignment:
| Q |
92 |
gttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttc |
191 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||| | ||| ||||||| | || ||||||||| |||||||| |||| |||| |||||||| |
|
|
| T |
1979269 |
gttagtgctagtattctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaatttcttcctcttactgaaagtta |
1979366 |
T |
|
| Q |
192 |
tctactcttaccccgtggttttttc |
216 |
Q |
| |
|
|||||||||||| | || ||||||| |
|
|
| T |
1979367 |
tctactcttacctcatgcttttttc |
1979391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 1979567 - 1979604
Alignment:
| Q |
220 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1979567 |
ttatttgttgaggggtttccacgtaaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 30165895 - 30165968
Alignment:
| Q |
239 |
cacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
312 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||||| | ||||||||||| || |||||| |||||||||||||| |
|
|
| T |
30165895 |
cacgtaaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 36615442 - 36615361
Alignment:
| Q |
240 |
acgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaa |
321 |
Q |
| |
|
||||||||| ||| ||||| ||| |||||||||| | |||||||||| ||| | ||||||||||| ||||||| ||||||| |
|
|
| T |
36615442 |
acgtaaataatgtatgttcggtttctcttttctcatatcttattttaactgtgcgataatattttattactctagtacctaa |
36615361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 44562808 - 44562748
Alignment:
| Q |
366 |
aagtgtctaaacaacctaaaccaaagattagtggtgtttagtggttaaggtataattagtt |
426 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
44562808 |
aagtgtctaaacaatccgaaacaaagattagtggtgtttagtgattaagttctaattagtt |
44562748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 34359980 - 34360280
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34359980 |
atagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
34360077 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34360078 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
34360177 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaacaaatt |
327 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34360178 |
gaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacaaatt |
34360277 |
T |
|
| Q |
328 |
tag |
330 |
Q |
| |
|
||| |
|
|
| T |
34360278 |
tag |
34360280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 29585597 - 29585300
Alignment:
| Q |
25 |
tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagag |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| | ||||||||||||||||||||||| |
|
|
| T |
29585597 |
tagagtagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctagtttgtattagt--tagtattctcctatttataagagag |
29585500 |
T |
|
| Q |
125 |
agtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatt |
224 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29585499 |
agtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatt |
29585400 |
T |
|
| Q |
225 |
tgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
29585399 |
tgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctgatacctaaca |
29585300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 41718434 - 41718727
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41718434 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
41718531 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41718532 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
41718631 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41718632 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
41718727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Original strand, 41723160 - 41723453
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41723160 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
41723257 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41723258 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
41723357 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41723358 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
41723453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 34352272 - 34352546
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
34352272 |
atagtgagagaaaaaatatagagagaaaaattagtttctcctgtgagatttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
34352369 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34352370 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
34352469 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt |
304 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352470 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatatttt |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 9439665 - 9439372
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9439665 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
9439568 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9439567 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
9439468 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9439467 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 29 - 323
Target Start/End: Complemental strand, 9444385 - 9444092
Alignment:
| Q |
29 |
atagtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtg |
128 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9444385 |
atagtgagagaaaaaatatagagaggaaaaatagtttctcctgtgaggtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtg |
9444288 |
T |
|
| Q |
129 |
gtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgtt |
228 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9444287 |
gtatttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgtt |
9444188 |
T |
|
| Q |
229 |
gaggggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9444187 |
gaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
9444092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
250 |
tgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgt |
306 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 323
Target Start/End: Original strand, 30235038 - 30235339
Alignment:
| Q |
25 |
tagaatagtgagaggaaaaatatagagagaaaaattagtttctcctg-tgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagaga |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30235038 |
tagagtagtgagaggaaaaatatagagagaaaaattagtttctccttatgaggtttctcttacgtagtgttagtgtttgtattctcctatttataagaga |
30235137 |
T |
|
| Q |
124 |
gagtggtaattgtactctccttgtagttag-agagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggtttt-ttcccctt |
221 |
Q |
| |
|
|||||||||||||||||||||| || ||| |||||||||||||||||| ||| | ||| |||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
30235138 |
gagtggtaattgtactctccttataaataggagagaggtcctgtaatttcttctagttattgaaagttttctactcttatcccgtggtttttttcccctt |
30235237 |
T |
|
| Q |
222 |
atttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaa |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| || ||||||||||| ||||||| |||| || |
|
|
| T |
30235238 |
attcgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcattttttattttagctgtgtaataatattttgctactctggtacccaa |
30235337 |
T |
|
| Q |
322 |
ca |
323 |
Q |
| |
|
|| |
|
|
| T |
30235338 |
ca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 31 - 318
Target Start/End: Complemental strand, 16183913 - 16183636
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
16183913 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
16183826 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16183825 |
aatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttg |
16183726 |
T |
|
| Q |
230 |
aggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacc |
318 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16183725 |
aggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 451 - 626
Target Start/End: Complemental strand, 34814032 - 34813857
Alignment:
| Q |
451 |
aagaaatttgattccatttttgttctataggcttctgaatatgctaaaaggttggttaatcaagagaagtcttttgcttgtgccgaagtcgagagtacta |
550 |
Q |
| |
|
|||| ||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
34814032 |
aagatatttgatcccatctttgttcaataggcttctgaagatgctaaaaagttggttaatcaagagaagtcttttgcttgtgccgaaatcgagagtgcta |
34813933 |
T |
|
| Q |
551 |
gagcagtggtgctgagaattggggaggcacttgaagaacaagaaaaagttacacaagcttctaaaccacaggttct |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34813932 |
gagcagtggtgctgagaattggggaggcacttgaggaacaagaaaaagttacagaagcttctaaaccacaggttct |
34813857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 8140183 - 8139964
Alignment:
| Q |
102 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactctta |
201 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| | |||||| ||||||| |||||||||| |||| ||||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
202 |
ccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatat |
301 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
8140085 |
ccccatggttttctccccttatttgttgaggggtttccacataaatattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataatat |
8139986 |
T |
|
| Q |
302 |
tttgttactctgttacctaaca |
323 |
Q |
| |
|
|||||||||||| |||| |||| |
|
|
| T |
8139985 |
tttgttactctggtacccaaca |
8139964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 138 - 323
Target Start/End: Complemental strand, 8138645 - 8138460
Alignment:
| Q |
138 |
ctctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggttt |
237 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||| ||||| ||||||||||||||||| |||| || ||||||||| ||||||| |||||| |||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttgtttgttaaggggttt |
8138546 |
T |
|
| Q |
238 |
ccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
|||| ||| || |||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |||| |
|
|
| T |
8138545 |
ccacataattactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaaca |
8138460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 36528529 - 36528413
Alignment:
| Q |
209 |
gttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgtta |
308 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||| || || ||||||| |
|
|
| T |
36528529 |
gttttttttccttattcgtggaggggtttccacgtaaatattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgtta |
36528430 |
T |
|
| Q |
309 |
ctctgttacctaacaaa |
325 |
Q |
| |
|
||||| |||| |||||| |
|
|
| T |
36528429 |
ctctgatacccaacaaa |
36528413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 166 - 310
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
166 |
taattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcct |
265 |
Q |
| |
|
|||||| | ||||||||| |||||| ||||||||| | || |||||||| |||||||||||||||||| |||| | ||||||||| ||| || ||| ||| |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatggttttt-ccccttatttgttgagggttttc-atgtaaatattatgtatttagtccct |
5102652 |
T |
|
| Q |
266 |
ctttt-ctcgtctcttattttagctgcgtgataatattttgttact |
310 |
Q |
| |
|
||||| ||| ||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
5102651 |
ctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 160; Significance: 6e-85; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 31 - 323
Target Start/End: Complemental strand, 27508 - 27226
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||| |||| |
|
|
| T |
27508 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattcacctatttc-aagagaga-tggt |
27421 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| ||||||||||| ||||||||| || ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27420 |
aatttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttg |
27321 |
T |
|
| Q |
230 |
aggggtttccacgtaaa-tattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaaca |
323 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27320 |
aggggtttccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
27226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 9e-78; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 31 - 328
Target Start/End: Original strand, 46191266 - 46191551
Alignment:
| Q |
31 |
agtgagaggaaaaatatagagagaaaaattagtttctcctgtgaggtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggt |
130 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||| |
|
|
| T |
46191266 |
agtgagaggaaaaatatagagaggaaatatagtttctcctgtgaggtttctcctag----------tgttagtattctcctatttc-aagagagag-ggt |
46191353 |
T |
|
| Q |
131 |
aattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttg |
229 |
Q |
| |
|
|||| |||||||| || ||||||||| ||| ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46191354 |
aatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttctctactcttgtcccgtggttttttccccttatttgttg |
46191453 |
T |
|
| Q |
230 |
aggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctgttacctaacaaattt |
328 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
46191454 |
aggggtttccacgtaaa-atattgtgttcagttcctcttttctcgtctcttattttagctgcatgataatattttgttactctggttcctaacacattt |
46191551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 138 - 312
Target Start/End: Complemental strand, 30697300 - 30697126
Alignment:
| Q |
138 |
ctctccttgtagttagagagaggtcctgtaattttttccacttagtgaaagttctctactcttaccccgtggttttttccccttatttgttgaggggttt |
237 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggttt |
30697201 |
T |
|
| Q |
238 |
ccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
312 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30697200 |
ccacgtaaatattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactct |
30697126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 94 - 311
Target Start/End: Original strand, 4130173 - 4130389
Alignment:
| Q |
94 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttt-ttccacttagtgaaagttct |
192 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
4130173 |
tagtgttagtattgtcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttct |
4130270 |
T |
|
| Q |
193 |
ctactcttaccccgtggttttttccccttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcg |
292 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4130271 |
ctactcttgccccgtggttttttccctttatttgttgagggatttccacgtaaattttgtgtgttcagttcctcttttctcgtcacttattttagttgcg |
4130370 |
T |
|
| Q |
293 |
tgataatattttgttactc |
311 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4130371 |
tgataatattttgttactc |
4130389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 364683 - 364775
Alignment:
| Q |
220 |
ttatttgttgaggggtttccacgtaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactct |
312 |
Q |
| |
|
||||| ||| ||||| ||| |||||||||||||||| || ||||| ||||||| ||| |||||||| || ||||| |||||| ||||||| |
|
|
| T |
364683 |
ttattggttaaggggattcaacgtaaatattgtgtggtcgattccttttttctcatctattattttaattgtatgatattattttattactct |
364775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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