View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12397_low_7 (Length: 236)
Name: NF12397_low_7
Description: NF12397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12397_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 44692489 - 44692289
Alignment:
| Q |
21 |
cattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttg |
120 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44692489 |
cattgatttcattcatggccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagcctgttg |
44692390 |
T |
|
| Q |
121 |
agacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccaca |
220 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44692389 |
cgacgattcaaagttatataaatcctcagttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcacgttcttcttccaca |
44692290 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
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| |
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| T |
44692289 |
g |
44692289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 44632315 - 44632121
Alignment:
| Q |
23 |
ttgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgag |
122 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
44632315 |
ttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgag |
44632216 |
T |
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| Q |
123 |
acgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaa-aacaaaa--aagaaccttctcaagttcttcttccac |
219 |
Q |
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||||||||||| ||||| |||| |||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
44632215 |
gttattcaaagttacataaaccctcagttcaccttatc-------aataaatactaattgtaataacaaaaataaaaaccttctcaagttcttcttccac |
44632123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 44653790 - 44653599
Alignment:
| Q |
21 |
cattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
44653790 |
cattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttg |
44653691 |
T |
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| Q |
121 |
agacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccaca |
220 |
Q |
| |
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||| |||||||||||| |||||||| | ||||||| |||| | |||||| || | || ||||||||||||||||||||||||||||||||||| |
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| T |
44653690 |
agatgattcaaagttacataaatccacagttcaccatatc-------aataaataatattcgt--aacaaaaaagaaccttctcaagttcttcttccaca |
44653600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 44682798 - 44682608
Alignment:
| Q |
21 |
cattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttg |
120 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
44682798 |
cattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttg |
44682699 |
T |
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| Q |
121 |
agacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccaca |
220 |
Q |
| |
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||| |||||||||||| |||||||| | ||||||| ||||| ||||| | || || ||||||||||||||||||||||||||||||||||| |
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| T |
44682698 |
agatgattcaaagttacataaatccacagttcaccatatcaataaataat--------atcgt--aacaaaaaagaaccttctcaagttcttcttccaca |
44682609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 44636570 - 44636768
Alignment:
| Q |
21 |
cattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttg |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
44636570 |
cattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaatttcatagccataagctgacatagcctgtta |
44636669 |
T |
|
| Q |
121 |
agacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaa-aaaagaaccttctcaagttcttcttccac |
219 |
Q |
| |
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||||||| |||||||| |||||||||| ||||||||||||| |||| | |||| |||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
44636670 |
agacgatccaaagttacataaatcctcagttcaccttatcaacaaat-gaaaattgtaat--aaaaacaacaaaaaaaccttctcaagttcttcttccac |
44636766 |
T |
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