View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12398_high_1 (Length: 294)
Name: NF12398_high_1
Description: NF12398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12398_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 42249345 - 42249609
Alignment:
| Q |
11 |
cacagatatcaagcctaaccatattggcatttgtcaaatgagctaggacttatagatgattgacatggtttctaattctggaaggnnnnnnnncacatac |
110 |
Q |
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| T |
42249345 |
cacagatatcaagcctaaccatattggcatttgtcatatgagctaggacttatagatgattgacatggtttctaattctggaaggaaaaaaa-cacatac |
42249443 |
T |
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| Q |
111 |
caaaagcaatgcattacgtgtagcatcttcagtttgagcattcccaaaaacagtagtcaaaccgatcacctccacgtccggacaatgaaatgccatcaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
42249444 |
caaaagcaatgcattacgtgtagcatcttcagtttgagcattcccaaaaacagtagtcaaaccgatcacctccacttcaggacaatgaaatgccatcaag |
42249543 |
T |
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| Q |
211 |
atcgccatactatcatctgcataatcacaaaaatctaattcatatttcaccaacaaaaccagtaaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42249544 |
atcgccatactatcatctgcataatcacaaaaatctaattcatatttcaccaacaaaaccagtaaa |
42249609 |
T |
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