View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_11 (Length: 357)
Name: NF12399_high_11
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 20425443 - 20425774
Alignment:
| Q |
15 |
atatttcacatggtatgttactaaggaaaatagattatatactggataaatcatgattattttaaannnnnnnnnnnnnnctctagagttttatcatgta |
114 |
Q |
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| T |
20425443 |
atatttcacatggtatgttactaaggaaaatagattatatactggataaatcatgattattttaaaatatatatatat--ctctagagttttatcatatt |
20425540 |
T |
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| Q |
115 |
tcttccacggggtagaatttttgtgacctttgtcaaagtcataccatgttcaccatctgagtgttttgcttagtaattttccccttttaagcttggcgta |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20425541 |
tcttccatggggtagaatttttgtgacctttgtcaaagtcataccatgttcaccatctgagtgttttgcttagtaattttccccttttaagctaggcgta |
20425640 |
T |
|
| Q |
215 |
gcttcccctaatccgtgaaggatatttcacatcattaatgtttcaagtctaggttacttcataactcttattgacctacttttattttcattcttaattt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20425641 |
gcttcccctaatccgtgaaggatatttcacatcattaatgtttcaagtctaggttacttcataactcttattgacctacttttattttcattcttaattt |
20425740 |
T |
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| Q |
315 |
ttcaaattaagtgccattaggcttacacaggttc |
348 |
Q |
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||||||||||||||||||| ||||| ||| |||| |
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| T |
20425741 |
ttcaaattaagtgccattaagcttagacaagttc |
20425774 |
T |
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