View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_16 (Length: 314)
Name: NF12399_high_16
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_16 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 47651373 - 47651647
Alignment:
| Q |
22 |
accccataaacaagccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatcaaactttcggagg |
121 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47651373 |
accccataaacaagccatttatgcaatcaaacattttaccaaaattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatcaaactttcggagg |
47651472 |
T |
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| Q |
122 |
cagcaaaatacttgcaagcctaattgaaagagatatgaatctgcaaaatactttagctttgctcggtctctcttgttaattccattgtgcagagtttctt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47651473 |
cagcaaaatacttgcaagcctaattgaaagagatatgaatctgcaaaatactttagctttgctcggtctttcttgttaattccattgtgcagagtttctt |
47651572 |
T |
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| Q |
222 |
gcttttactcaaaaaatgatagtgggtgtattattggagtaggaggagataatgggtatcaggtactcaagagtc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47651573 |
gcttttactcaaaaaatgatagtgggtgtattattggagtaggaggagataatgggtatcagttactcaagagtc |
47651647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 169403 - 169339
Alignment:
| Q |
22 |
accccataaacaagccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
86 |
Q |
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| T |
169403 |
accccataaacaagccattcatgcaatcaaacattttaccaaaattgatcaaaggaaaaatgtag |
169339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 295
Target Start/End: Complemental strand, 169208 - 169069
Alignment:
| Q |
157 |
tgaatctgcaaaatactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatta |
254 |
Q |
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| T |
169208 |
tgaatctgtaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatgt |
169109 |
T |
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| Q |
255 |
ttggagtaggaggagataatgggtatcaggtactcaagagt |
295 |
Q |
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| T |
169108 |
ttg-agtagaaggagataatgggtatcagttactgaagagt |
169069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 93180 - 93266
Alignment:
| Q |
22 |
accccataaacaagccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatc |
108 |
Q |
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|||||| |||||| ||| | || |||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||| |
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| T |
93180 |
accccaaaaacaaaccattcatgcaatcaaacattttaccaaaattgataaaaaaaaaaacgtagtatataaacaattcatgaaatc |
93266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 93733 - 93810
Alignment:
| Q |
202 |
tccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtattattggagtaggaggagataatgggta |
279 |
Q |
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| T |
93733 |
tccattgtgtagggtttcttacttttactcaagaaaccataatgggtttatgtttggagtaagagaagataatgggta |
93810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 16179682 - 16179723
Alignment:
| Q |
45 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
86 |
Q |
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| T |
16179682 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
16179723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 295
Target Start/End: Original strand, 16179871 - 16180011
Alignment:
| Q |
157 |
tgaatctgcaaaa-tactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatt |
253 |
Q |
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||||||||||||| ||||| ||| ||||| ||||||||| ||| ||||| |||||||||||||||||||| | | || ||| | |||||||| ||| |
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| T |
16179871 |
tgaatctgcaaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatg |
16179970 |
T |
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| Q |
254 |
attggagtaggaggagataatgggtatcaggtactcaagagt |
295 |
Q |
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||| ||||| ||||||||||||||||||| |||| |||||| |
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| T |
16179971 |
tttg-agtagaaggagataatgggtatcagttactgaagagt |
16180011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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