View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12399_high_20 (Length: 288)
Name: NF12399_high_20
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 36552315 - 36552046
Alignment:
| Q |
1 |
agagctcagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaact |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36552315 |
agagctaagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaact |
36552216 |
T |
|
| Q |
101 |
atttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagatttttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36552215 |
atttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagatttttta |
36552116 |
T |
|
| Q |
201 |
acatttgatgaatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36552115 |
acatttgatgaatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaat |
36552046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 36559830 - 36560099
Alignment:
| Q |
1 |
agagctcagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaact |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36559830 |
agagctaagataaaacaatatacggtgacaatcagtatgtcttcattttctccagctactatattttaacatatacaaagtatgaccacatacacaaact |
36559929 |
T |
|
| Q |
101 |
atttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagatttttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36559930 |
atttaaaatgcctaaaacagagcattggacaaccaaactaaacagagcatttaaaacaaggtgaaagatttgaaaatctattttaaagggagatttttta |
36560029 |
T |
|
| Q |
201 |
acatttgatgaatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaat |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36560030 |
acatttgatgaatgtatattttgtgtctttgattttctttatgaagattacaaaaaagatatattagaat |
36560099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University