View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_23 (Length: 275)
Name: NF12399_high_23
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 5932914 - 5932653
Alignment:
| Q |
8 |
caataagaacaccaacgttattgataacaacacatatctctaaaagtgcttttccatatctcccaaaggcatcccccataagacttccatatgaagaaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932914 |
caataagaacaccaacgttattgataacaacacatatctctaaaactgcttttccatatctcccaaaggcatcccccataagacttccatatgaagaaag |
5932815 |
T |
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| Q |
108 |
attccctgcccttgaaaacctgagcatgaattcaactgacttctctgtcaaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5932814 |
attccctgcccttgaaaacctgagcatgaattcaactgacttctctgtcaaaaatgctgttaggactatagcaataagaccaggcaccatgcccaacttc |
5932715 |
T |
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| Q |
208 |
ttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcgataaattgaaaac |
269 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5932714 |
ttcacacaagcaggcaagcccatgatcccagcaccgataactgttgtcgataaattgaaaac |
5932653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 5961800 - 5961539
Alignment:
| Q |
8 |
caataagaacaccaacgttattgataacaacacatatctctaaaagtgcttttccatatctcccaaaggcatcccccataagacttccatatgaagaaag |
107 |
Q |
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|||| |||| |||||||||| |||| | |||||||||||||| ||||||||||| ||| ||||||||| ||| ||||||||||||||||| |||||||| |
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| T |
5961800 |
caatcagaataccaacgttagtgattataacacatatctctaccagtgcttttccgtatttcccaaaggtatctcccataagacttccataggaagaaag |
5961701 |
T |
|
| Q |
108 |
attccctgcccttgaaaacctgagcatgaattcaactgacttctctgtcaaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttc |
207 |
Q |
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| T |
5961700 |
attccctgctctcgaaaacctgatcatgaactcaattgccttctctgtcaataatgctgttaggattatggcaagaagaccaggtaccattcccaacttt |
5961601 |
T |
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| Q |
208 |
ttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcgataaattgaaaac |
269 |
Q |
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|| || ||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||| |
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| T |
5961600 |
ttgacgcaagcgggcaagcccatgatcccagcaccaataactgtggtggacaaattgaaaac |
5961539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 55 - 269
Target Start/End: Complemental strand, 5967263 - 5967049
Alignment:
| Q |
55 |
gcttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctg |
154 |
Q |
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|||||||| ||| ||||| ||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||||| ||||| |||| ||||||||||| |
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| T |
5967263 |
gcttttccgtatttcccataggcatctcccataagatttccataggaagaaagtttccctgccctagaaaacctgattatgaaatcaattgacttctctg |
5967164 |
T |
|
| Q |
155 |
tcaaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgt |
254 |
Q |
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|||| || |||||||||||||| |||||||||||||||||| || ||||| |||||||| |||||||| ||||| || |||||||| |||| ||| || |
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| T |
5967163 |
tcaataaagctgttaggactatgacaataagaccaggcaccatccctaactttttcacacatgcaggcaatcccataattccagcaccaataattgtggt |
5967064 |
T |
|
| Q |
255 |
cgataaattgaaaac |
269 |
Q |
| |
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|||||||||||||| |
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| T |
5967063 |
tgataaattgaaaac |
5967049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 57 - 269
Target Start/End: Complemental strand, 5983175 - 5982963
Alignment:
| Q |
57 |
ttttccatatctcccaaaggcatcccccataagacttccatatgaagaaagattccctgcccttgaaaacctgagcatgaattcaactgacttctctgtc |
156 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | || || |||| |||||| ||||| |
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| T |
5983175 |
ttttccgtatttcccaaaggcatcccccataagacttccataggaagaaagattccctgccctcgaaaacctaatcacaaactcaattgacttttctgtt |
5983076 |
T |
|
| Q |
157 |
aaaaatgctgttaggactatagtaataagaccaggcaccatgcccaacttcttcacacaagcaggcaaacccatgatcccagcaccgataactgttgtcg |
256 |
Q |
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| T |
5983075 |
agtaatgctgtgaggattatggcaagaagaccaggtaccatccccaactttctgacacaagcaggcaagcccatgattccggcaccaatgactgtggttg |
5982976 |
T |
|
| Q |
257 |
ataaattgaaaac |
269 |
Q |
| |
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| ||||||||||| |
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| T |
5982975 |
acaaattgaaaac |
5982963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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