View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_25 (Length: 266)
Name: NF12399_high_25
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 107 - 248
Target Start/End: Original strand, 35739394 - 35739536
Alignment:
| Q |
107 |
acttgggattaagaaaaaagattttaaaaaatggggcattaccacgaaaacggccattacaaaacggtataggcaagcgatg-taccgtttttgcccgat |
205 |
Q |
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| T |
35739394 |
acttgggattaagaaaaaagattttaaaaaatggggcattaccacgaaaacggccattacaaaacggtataggcaagcgatgttaccgtttttgcccgat |
35739493 |
T |
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| Q |
206 |
ttaatggagggaaggaaaatcacacgaaaacgccgtgacgtaa |
248 |
Q |
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| T |
35739494 |
ttaatggtgggaaggaaaatcacacgaaaacgccgtgatgtaa |
35739536 |
T |
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Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 35734552 - 35734645
Alignment:
| Q |
14 |
agatagcaaatgtggtgagaaaaatcaacctagataaccattggggagagggggaatataataatcaatataagagaaggggcatgtcttatca |
107 |
Q |
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| T |
35734552 |
agatagcaaatgtggtgagaaaaatcaacctagataaccattggggagagggggaatataataatcaatataagagaaggggcatgtcttatca |
35734645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 29522152 - 29522055
Alignment:
| Q |
151 |
cgaaaacggccattacaaaacggtataggcaagcgatg-taccgtttttgcccgatttaatggagggaaggaaaatcacacgaaaacgccgtgacgtaa |
248 |
Q |
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||||||||| | ||| ||||| |||||||||||||| | ||||||||||||||||||||| || |||||| |||||||||| ||||| | ||||||||| |
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| T |
29522152 |
cgaaaacggacgttataaaaccgtataggcaagcgacgataccgtttttgcccgatttaacggtgggaagtaaaatcacac-aaaacactgtgacgtaa |
29522055 |
T |
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