View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_5 (Length: 515)
Name: NF12399_high_5
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 47460590 - 47460098
Alignment:
| Q |
18 |
cacttgtttgacaacacattcagaacaaaatgaatggtaaca-tatctgattcctaaacatttcatcagccgtttttgtttcggcacaaatctcgcaaat |
116 |
Q |
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| T |
47460590 |
cacttgtttgacaacacattcagaacaaaatgaatggtaacaatatctgattcctaaacatttcatcagccgtttttgtttcggcacaaatctcgcaaat |
47460491 |
T |
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| Q |
117 |
gatgattggagaagacggttcatctgctttgatgacaatgccaacttcaatagactttgacgaagatgctacgcagtgcaacggtggtgactgcataagg |
216 |
Q |
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| T |
47460490 |
gatgattggagaagacggttcatctgctttgatgacaatgccaacttcaatagactttgacgaagatgctacacagtgcaacggtggtgactgcataagg |
47460391 |
T |
|
| Q |
217 |
gtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaacgtggtggtgccaagaaggaagaggatgaagggtttt |
316 |
Q |
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| T |
47460390 |
gtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaatgtggtggtgccaagaaggaagaggatgaagggtttt |
47460291 |
T |
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| Q |
317 |
ggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacagggacgttagggtcaatttcatcgtc |
416 |
Q |
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| T |
47460290 |
ggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacaggaacgttagggtcaatttcatcgtc |
47460191 |
T |
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| Q |
417 |
ggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattgttgtttgtgtctctgcttc |
509 |
Q |
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| T |
47460190 |
ggagacaacagagaagtaaaagtcgtctacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattgttgtttgtgtctatgcttc |
47460098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 490
Target Start/End: Complemental strand, 47467008 - 47466724
Alignment:
| Q |
203 |
gtgactgcataagggtttggtgaaactgtaactcttcagaaaccgtttttgatgaagatgctacgcatggtaatgaacgtggtggtgccaagaaggaaga |
302 |
Q |
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| T |
47467008 |
gtgacttcataagggtttcgttgaacagtaactcatcatcgacagtttttgatgaagacgctacgcacggaaaaaatggtggtggtgaagaggagaaaga |
47466909 |
T |
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| Q |
303 |
ggatgaagggttttggtgagaagtgatgacagaggccaataaggtttcttgaaactgtaatgcttcagcgtacttgtcatcggagacagggacgttaggg |
402 |
Q |
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| T |
47466908 |
ggacgagtggttttggtgagaagtgatggcagaggccattaaggtttcttggaactgtaatgcttcagcgtacttgtcatcggagacaaaaac---aggg |
47466812 |
T |
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| Q |
403 |
tcaatttcatcgtcggagacaacagagaagtaaaagtcgtcaacggtgtcaggaccaaggaatgaggatgattgttgttgtgccattg |
490 |
Q |
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| T |
47466811 |
tcagtttcttgatcaaagacaatagagaagtaaaggtcgtctacagtgtcaaggccaatgaatgaggaggatgcttgttgcgccattg |
47466724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 47467256 - 47467159
Alignment:
| Q |
18 |
cacttgtttgacaacacattcagaacaaaatgaatggtaacatatctgattcctaaacatttcatcagccgtttttgtttcggcacaaatctcgcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| || | || || ||||||||||||| |||||||||||| ||||||||||| |||| |
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| T |
47467256 |
cacttgtttgacaacacattcagaacaaaatgaatgataacatctcaggtttctgaacatttcatcagtcgtttttgtttccgcacaaatctcacaaa |
47467159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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