View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_7 (Length: 447)
Name: NF12399_high_7
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 40 - 428
Target Start/End: Original strand, 8706565 - 8706953
Alignment:
| Q |
40 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
139 |
Q |
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| T |
8706565 |
tattaaagtgtgtatctcttattagtgaaccatccattgctgtgacatcattttagcaatgcttggtgattttcttttatagattgtgaaaaagtacatg |
8706664 |
T |
|
| Q |
140 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctctt |
239 |
Q |
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| T |
8706665 |
gatgaaatgaaatatctaggttgagttagttttgatgtttttctttaatagactcagaagtactcttttctttatactttgatgtggctgttattctctt |
8706764 |
T |
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| Q |
240 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaac |
339 |
Q |
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| T |
8706765 |
ccttttgaaatgctatagattgaactttcataatgtttattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaac |
8706864 |
T |
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| Q |
340 |
atcctagttcaggcgaatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaag |
428 |
Q |
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| T |
8706865 |
atcctagttcaggcgaatactgtgcatcaaaattgttgaaatcaacacatggtaatgttcatggaagcacctgttttcaatctttaaag |
8706953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 178 - 368
Target Start/End: Original strand, 8691930 - 8692121
Alignment:
| Q |
178 |
ttttctttaatagactcagaagtactcttttctttatactttgacgtggctgttattctcttccttttgaaatgcta-tagattgaactttcataatgtt |
276 |
Q |
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| T |
8691930 |
ttttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgtt |
8692029 |
T |
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| Q |
277 |
tattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
368 |
Q |
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| T |
8692030 |
tattttcttctaaaattttacagtgtcgcaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatca |
8692121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 14384711 - 14384633
Alignment:
| Q |
290 |
aattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
368 |
Q |
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| T |
14384711 |
aattttacagtatggcaatgttctggatacttcaacggcttttcttgaacatcctagttcaggcgaatactatgcatca |
14384633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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