View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_8 (Length: 412)
Name: NF12399_high_8
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 9036178 - 9036336
Alignment:
| Q |
18 |
ggtaccaatgttgtggaatcttaggatgaggttgttgttttgaatgtacaaaagtagcaattatagcacaaaacaaaatcatgaatgcacgagtgttttc |
117 |
Q |
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| T |
9036178 |
ggtaccaatgttgtggaatcttaggatgaggttgttgttttgaatgtacaaaagtagcaattatagcacaaaacaaaatcatgaatgcacgagtgttttc |
9036277 |
T |
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| Q |
118 |
atcattgatgtgtttttagaagatagtacaatagaaatatttttcactctttattaacc |
176 |
Q |
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| T |
9036278 |
atcattgatgtgtttttagaagatagtacaatagaaatattttttactctttattaacc |
9036336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 9036420 - 9036553
Alignment:
| Q |
264 |
ctcaatgtctcaacaaagacaacctcatatggtgagtggtaacaataatcaagaccaatataatgacacaacatttaccaaattatttgttggagggtta |
363 |
Q |
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| T |
9036420 |
ctcaatgtctcaacaaagacaacctcatatggtgagtggtaacaataatcaagaccaatataatgacacaacatttaccaaattatttgttggagggtta |
9036519 |
T |
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| Q |
364 |
gcttgggaaactcaaagggaaacaatgagaatgt |
397 |
Q |
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| T |
9036520 |
gcttgggaaactcaaagggaaacaatgagaatgt |
9036553 |
T |
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