View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_high_9 (Length: 386)
Name: NF12399_high_9
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 277832 - 278193
Alignment:
| Q |
20 |
catataaggatgaagtcactccctattctattctatt-----atatactacatacattcttattcctatttgtccactataaatagatggaatactatca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277832 |
catataaggatgaagtcactccctattctattctattctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatca |
277931 |
T |
|
| Q |
115 |
aacactaaaaacaagtgtagagatcttctgcagtattacattaatataacacttaacactctgaaataaaatggaacctactgggcttatttctcaagaa |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
277932 |
aacactaaaaacaagtgtagagatcttctgcaatattacattaatataacact-aacactctgaaataaaatggaacctactggtcttatttctcaagaa |
278030 |
T |
|
| Q |
215 |
tggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttctatcaaaattcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278031 |
tggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttacttggtaactcctcattctcacaacatttctatcaaaattcca |
278130 |
T |
|
| Q |
315 |
atttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaggttc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
278131 |
atttcggaactgaaactacattttggccaccatatgattccacaatagttactgcacaagttc |
278193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 176
Target Start/End: Original strand, 12331329 - 12331449
Alignment:
| Q |
52 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaaacactaaaaacaagtgtagagatcttctgcagtatt |
151 |
Q |
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| T |
12331329 |
ctattatatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaagtactaaaaacaagtgtagagatcttctac---att |
12331425 |
T |
|
| Q |
152 |
acattaatataacacttaacactct |
176 |
Q |
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| T |
12331426 |
acattaatataacac-taacactct |
12331449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 25666484 - 25666364
Alignment:
| Q |
52 |
ctattatatactacatacattcttattcctatttgtccactataaatagatggaatactatcaaacactaaaaacaagtgtagagatcttctgcagtatt |
151 |
Q |
| |
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|||||||||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
25666484 |
ctattatatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaagtactaaaaacaagtgtagagatcttctac---att |
25666388 |
T |
|
| Q |
152 |
acattaatataacacttaacactct |
176 |
Q |
| |
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||||||||||||||| ||||||||| |
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| T |
25666387 |
acattaatataacac-taacactct |
25666364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 4434682 - 4434568
Alignment:
| Q |
58 |
tatactacatacattcttattcctatttgtccactataaatagatggaatactatcaaacactaaaaacaagtgtagagatcttctgcagtattacatta |
157 |
Q |
| |
|
|||| ||| ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |
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| T |
4434682 |
tatagtacctacattcttattcctctttgtcgactataaatagatggaatactatcaagtactaaaaacaagtgtagagatcttctac---attacatta |
4434586 |
T |
|
| Q |
158 |
atataacacttaacactct |
176 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
4434585 |
atataacac-taacactct |
4434568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 48142249 - 48142185
Alignment:
| Q |
210 |
aagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagttactt |
274 |
Q |
| |
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||||||||| ||||||||||||| | ||||| ||||||||| |||| |||||| |||||||||| |
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| T |
48142249 |
aagaatggagttctcttagtggattttacacagctgaggaagctgattttatgggccagttactt |
48142185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 48147041 - 48146974
Alignment:
| Q |
203 |
atttctcaagaatggacttctcttagtggactctacactgctgaggaatctgactttatgaaccagtt |
270 |
Q |
| |
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|||||| |||||||| |||||||||||||| ||||| ||||||||| ||||||| ||||| ||||| |
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| T |
48147041 |
atttctgaagaatgggattctcttagtggacagtacacagctgaggaagctgacttcatgaatcagtt |
48146974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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