View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_11 (Length: 379)
Name: NF12399_low_11
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 1536883 - 1537238
Alignment:
| Q |
1 |
cttgtgggagagtcgaccttgcaagtgaatcaactacttaccaattgagtccacctttgtcgatttatagtacataaatttattccttcacaaaaccctc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1536883 |
cttgtgggagagtcgaccttgcaagtgaattaactacttaccaattgagtccaccttcgtcgacttatagtacataaatttattccttcacaaaaccctc |
1536982 |
T |
|
| Q |
101 |
tttgaagtttcnnnnnnnccacttagcataaggacttgcnnnnnnnaaatnnnnnnnnccactcaacacaaggacttgatttctccttcaaaggttacca |
200 |
Q |
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||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1536983 |
tttgaagtttcaagaaaaccacttagcataaggacttgctttttttaaataaaaaaaaccactcaacacaaggacttgatttctccttcaaaggttacca |
1537082 |
T |
|
| Q |
201 |
agaatccttaactttgctcaacgtgcttctgtcataactgtgtgataacatagatgtataggaacaaagatatatactttaaatatttggattaattggt |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1537083 |
agaacccttaactttgctcaacgtgcttctgtcataactgtgtgataacatagatgtataggaacaaagatatatactttagatatttggattaattggt |
1537182 |
T |
|
| Q |
301 |
tttagtatttcgttgtaatttgtctgatcaatctttgtgtttttgatgaatgtgct |
356 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1537183 |
tttagtatttggttgtaatttgtctgatcaatctttgtgtttttgatgaatgtgct |
1537238 |
T |
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