View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12399_low_13 (Length: 356)
Name: NF12399_low_13
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 6426005 - 6425681
Alignment:
| Q |
17 |
aaaatcatcatatagcccatttcgtgttctgcataactttctactatactaggtaagatttgtattttgaagtaaacaaaacata--aaaatatcaaaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6426005 |
aaaatcatcatatagcccatttcgtgttctgcataactttctactatactaggtaagatttgtattttgaagtaaacaaaacatataaaaatatcaaaaa |
6425906 |
T |
|
| Q |
115 |
catatttttgtgtgtggtaatatgtttggaatagacatagcttattttagcatcaatttccgagtgttttgttttgaccttggacaattgcttctccaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6425905 |
catatttttgtgtgtggtaatatgtttggaatagacatagcttattttagcatcaatttccaagtgttttgttttgaccttggacaattgcttctccaat |
6425806 |
T |
|
| Q |
215 |
tgaattaagaaataataagagcaaagctctccttcaaaggtttcccattgttgaaaaactttaaaatattcaaattggtccactagattttgtaagagaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6425805 |
tgaattaagaaataataagagcaaagctctccttcaaaggtttcccattgttgaaaaactttaaaatattcaaattggtccactagattttgtaagagaa |
6425706 |
T |
|
| Q |
315 |
taggccaaccaaacggtctatcagc |
339 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
6425705 |
taggccaaccaaacagtctatcagc |
6425681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 172
Target Start/End: Complemental strand, 14820084 - 14819960
Alignment:
| Q |
50 |
taactttctactatactaggtaagatttgtattttgaagtaaacaaaacata--aaaatatcaaaaacatatttttgtgtgtggtaatatgtttggaata |
147 |
Q |
| |
|
|||||| ||| |||| | |||||||||| ||||||||||||||| || |||| ||||||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
14820084 |
taacttgctattatagtcggtaagatttatattttgaagtaaacgaagcatataaaaatatcagaaacatataattgtgtgtggtaatacgtttggaatc |
14819985 |
T |
|
| Q |
148 |
gacatagcttattttagcatcaatt |
172 |
Q |
| |
|
|||| | |||||||||||||||||| |
|
|
| T |
14819984 |
gacaaaacttattttagcatcaatt |
14819960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 6394322 - 6394272
Alignment:
| Q |
176 |
gagtgttttgttttgaccttggacaattgcttctccaattgaattaagaaa |
226 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6394322 |
gagtgttctgttttgaccttggacaattgcttctccaattgaattaagaaa |
6394272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University