View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_15 (Length: 354)
Name: NF12399_low_15
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 49517927 - 49518250
Alignment:
| Q |
1 |
agaaagccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgt |
100 |
Q |
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| T |
49517927 |
agaaggccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgt |
49518026 |
T |
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| Q |
101 |
taagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaagag |
200 |
Q |
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| T |
49518027 |
taagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaa--------------ag |
49518112 |
T |
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| Q |
201 |
cttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaatg |
300 |
Q |
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| T |
49518113 |
cttgaactattgcttcctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttaaaaaaaggaaggacaaaatggggaaggagaatg |
49518212 |
T |
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| Q |
301 |
ttattattgatgagggtaaagtaccaaacagtacatat |
338 |
Q |
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| T |
49518213 |
ttattattgatgagggtaaagtaccaaacagtacatat |
49518250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 27747305 - 27747621
Alignment:
| Q |
1 |
agaaagccaagaaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgt |
100 |
Q |
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| T |
27747305 |
agaaggccaagaagaacaaatcgaagtattcatcagatgatgatagtgatcaacaagttattgaagcagcaaatgagttc---attgaggaacctagtgt |
27747401 |
T |
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| Q |
101 |
taagaagaggaagaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaagag |
200 |
Q |
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| T |
27747402 |
taagaagaggaagaagacagaaaagagtaaaactgacaa---tcata---------------tggatatagttgctgttgacaaagcaagcaaagaagag |
27747483 |
T |
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| Q |
201 |
cttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaatg |
300 |
Q |
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| T |
27747484 |
cttgagttattgcttgctgatgacaaggcgacagaaactggtctcaaaggatatagtctaaaatttaaaaaaaggaaggacaaaatgggaaaggagaatg |
27747583 |
T |
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| Q |
301 |
ttattattgatgagggtaaagtaccaaacagtacatat |
338 |
Q |
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| T |
27747584 |
ttattattgatgagggtaaagttccaaacagtacatat |
27747621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
182 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
259 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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