View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_16 (Length: 354)
Name: NF12399_low_16
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 21960832 - 21960507
Alignment:
| Q |
21 |
ttcttcattttctaatagattaggaaaaatcggttttgaaaataata------ttagagttggttctaaaggtggtaactttaatgggttttcttcgttt |
114 |
Q |
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||||||| ||||||| |||||||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
21960832 |
ttcttcaatttctaagagattaggaaaaatgggttctgaaaataataagaatgttagagttggttctcaaggtggaaactttaatggattttcttcgttt |
21960733 |
T |
|
| Q |
115 |
tcttcaatttctaagaggttagggaaaatgggttttgagattaataagaatatcgggttgggttgcaaaggtggtagttttaatgggttttcgttgttat |
214 |
Q |
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| T |
21960732 |
tcttcaatttctaagaggttagggaaaatgggttttgagattaataagaatatcgggttgggttgcaaaggtggtagctttaatgggttttcgtcgttat |
21960633 |
T |
|
| Q |
215 |
ctaagaattttaggagattagacaaaaggggttttgaagttaataagaattttaggagattttactatgttgatccaaaaaatgtgcagcattttaagcc |
314 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21960632 |
ctaagaattttagaagattagacaaaaagggttttgaagttaataagaattttaggagattttactatgttgatccaaaaaatgtgcagcattttaagcc |
21960533 |
T |
|
| Q |
315 |
aagagggacaaagaattggtttcaga |
340 |
Q |
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||||||| |||| ||||||||||||| |
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| T |
21960532 |
aagagggccaaataattggtttcaga |
21960507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 21960864 - 21960781
Alignment:
| Q |
82 |
aaaggtggtaactttaatgggttttcttcgttttcttcaatttctaagaggttagggaaaatgggttttgagattaataagaat |
165 |
Q |
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||||||| || |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||| | |||||||||| |
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| T |
21960864 |
aaaggtgctagctttaatgggttttcttcattttcttcaatttctaagagattaggaaaaatgggttctgaaaataataagaat |
21960781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 29941579 - 29941485
Alignment:
| Q |
244 |
ggttttgaagttaataagaattttaggagattttactatgttgatccaaaaaatgtgcagcattttaagccaagagggacaaagaattggtttca |
338 |
Q |
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||||||||| ||||||| ||||||||||||||||||| ||| |||| |||||||| | |||||| ||||||||| |||| |||||||||| |
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| T |
29941579 |
ggttttgaaattaataacaattttaggagattttactctgtcaatcctcaaaatgtgtggaattttatgccaagaggagcaaaagattggtttca |
29941485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 903935 - 904260
Alignment:
| Q |
21 |
ttcttcattttctaatagattaggaaaaatcggttttgaaaataata------ttagagttggttctaaaggtggtaactttaatgggttttcttcgttt |
114 |
Q |
| |
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||||||| ||||||| |||||||||||||| |||| ||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
903935 |
ttcttcaatttctaagagattaggaaaaatgggttgtgaaaataataagaatattagggttggttctcaaggttgtaactttaatgggttttcttcgttt |
904034 |
T |
|
| Q |
115 |
tcttcaatttctaagaggttagggaaaatgggttttgagattaataagaatatcgggttgggttgcaaaggtggtagttttaatgggttttcgttgttat |
214 |
Q |
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|||| |||| ||||| |||| |||| |||||||||||||||||||||||| ||||||||||| ||||||| | | |||||||| ||||||| ||| | |
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| T |
904035 |
acttcgatttgtaagatattagataaaaggggttttgagattaataagaatattgggttgggttgtaaaggtgttggctttaatggcttttcgtcgtttt |
904134 |
T |
|
| Q |
215 |
ctaagaattttaggagattagacaaaaggggttttgaagttaataagaattttaggagattttactatgttgatccaaaaaatgtgcagcattttaagcc |
314 |
Q |
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| T |
904135 |
cgaagaatttcaagagattagaccaaaggggttttgaagttaatacgaattttagaagattatactatgtggatcctcaaaatgtgcggcattttaagcc |
904234 |
T |
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| Q |
315 |
aagagggacaaagaattggtttcaga |
340 |
Q |
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||||||| |||||||||||||||||| |
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| T |
904235 |
aagagggccaaagaattggtttcaga |
904260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 264
Target Start/End: Original strand, 903897 - 904085
Alignment:
| Q |
76 |
ggttctaaaggtggtaactttaatgggttttcttcgttttcttcaatttctaagaggttagggaaaatgggttttgagattaataagaatatcgggttgg |
175 |
Q |
| |
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||||| |||| || || |||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||| ||| | |||||||||||| || | | |
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| T |
903897 |
ggttccaaagatgctagctttaatgtgttttcttcattttcttcaatttctaagagattaggaaaaatgggttgtgaaaataataagaatattagggttg |
903996 |
T |
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| Q |
176 |
gttgcaaaggtggtagttttaatgggttttcgttgttatctaagaattttaggagattagacaaaaggggttttgaagttaataagaat |
264 |
Q |
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| T |
903997 |
gttctcaaggttgtaactttaatgggttttcttcgtttacttcgatttgtaagatattagataaaaggggttttgagattaataagaat |
904085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 246615 - 246542
Alignment:
| Q |
76 |
ggttctaaaggtggtaactttaatgggttttcttcgttttcttcaatttctaagaggttagggaaaatgggtttt |
150 |
Q |
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||||| ||||| | |||||||||||||||||||| ||||||||||||| |||||| ||||| | | |||||||| |
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| T |
246615 |
ggttccaaaggagctaactttaatgggttttctt-attttcttcaatttttaagagattaggtacactgggtttt |
246542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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