View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_19 (Length: 304)
Name: NF12399_low_19
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 48225203 - 48225478
Alignment:
| Q |
16 |
tgtgcccatttcaccatttgtgctactcgatctcttatatgaatcaatgccccaccactactttttattggaatcaatagtcattttaacatttccccag |
115 |
Q |
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| T |
48225203 |
tgtgcccatttcaccatttgtgctactc----tctcatatgaatcaatgccccaccactactttttattggaatcaatagtcattgtaacatttccccag |
48225298 |
T |
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| Q |
116 |
ccacaaaatatgtgcgaactgaatagtatatgtcctaaatgattaatgaagcaattatcagtggaactgataatcaatccaacaaatgagtagtttaatt |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48225299 |
ccacaaaatatgtgcgaactgaatagaatatgtcctaaatgattaatgaagcaattatcagtggaactgataatcaatccaacaaatgagtagtttaatt |
48225398 |
T |
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| Q |
216 |
tgatccatgtacc-----aaatgagttaaatttgagaggatgtggactttccttgtccacaacatttggtttctccttct |
290 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48225399 |
tgatccatgtaccaaattaaatgagttaaatttgagaggatgtggactttccttgtccacaacatttggtttctccttct |
48225478 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 4328927 - 4328959
Alignment:
| Q |
63 |
tgccccaccactactttttattggaatcaatag |
95 |
Q |
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| T |
4328927 |
tgccccaccactactttttagtggaatcaatag |
4328959 |
T |
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