View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_2 (Length: 576)
Name: NF12399_low_2
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_2 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Original strand, 47651100 - 47651647
Alignment:
| Q |
11 |
gaagcacagacacatagagatacttaaaccgaacattacactaactttgatattgcgacaccagtaaaaacctgcaccaaactgctagagagctaaagac |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47651100 |
gaagcaccgacacatagagatacttaaaccgaacattacactaactttgatattgcgacaccagtaaaaacctgcaccaaactgctagagagctaaagac |
47651199 |
T |
|
| Q |
111 |
ccaaggccagaacccccagacataaccaaaccacagtcaccacaaaacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaa |
210 |
Q |
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| T |
47651200 |
ccaaggccagaacccccagacataaccaaaccacagtcaccacaaaacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaa |
47651299 |
T |
|
| Q |
211 |
ccttcacagtcaaacaaaaataaccctagattttaattgagggagaaagccagcggaaacaaatcattgacaagccccataaacaaaccacttatacaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||| |||| |
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| T |
47651300 |
ccttcacagtcaaacaaaaataaccctagattttaattgagggagaaagccagcggaaacaaattattgacaaaccccataaacaagccatttatgcaat |
47651399 |
T |
|
| Q |
311 |
caaacattttaccaaaattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatcaaactttcggaggcagcaaaatacttgcaagcctaattga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47651400 |
caaacattttaccaaaattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatcaaactttcggaggcagcaaaatacttgcaagcctaattga |
47651499 |
T |
|
| Q |
411 |
aagagatatgaatctgcaaaatactttagctttgctcggtctctcttgttaattccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggt |
510 |
Q |
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| T |
47651500 |
aagagatatgaatctgcaaaatactttagctttgctcggtctttcttgttaattccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggt |
47651599 |
T |
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| Q |
511 |
gtattattggagtaggaggagataatgggtatcaggtactcaagagtc |
558 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47651600 |
gtattattggagtaggaggagataatgggtatcagttactcaagagtc |
47651647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 191 - 348
Target Start/End: Complemental strand, 169496 - 169339
Alignment:
| Q |
191 |
aattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagattttaattgagggagaaagccagcggaaacaaatcattgacaagccccat |
290 |
Q |
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|||| |||||||||||| ||| |||| |||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||| |||||| |
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| T |
169496 |
aattattccccttttagcaacagtcacggtcaaacaaaaataaccctagattttgattgagagagaaagccagaggaaacaaataattgacaaaccccat |
169397 |
T |
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| Q |
291 |
aaacaaaccacttatacaatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
348 |
Q |
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|||||| ||| | || ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
169396 |
aaacaagccattcatgcaatcaaacattttaccaaaattgatcaaaggaaaaatgtag |
169339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 557
Target Start/End: Complemental strand, 169208 - 169069
Alignment:
| Q |
419 |
tgaatctgcaaaatactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatta |
516 |
Q |
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|||||||| ||||||||| ||| ||||| ||||||||| ||| ||||| |||||||||||||||||||| | | || ||| | |||||||| ||| |
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| T |
169208 |
tgaatctgtaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatgt |
169109 |
T |
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| Q |
517 |
ttggagtaggaggagataatgggtatcaggtactcaagagt |
557 |
Q |
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||| ||||| ||||||||||||||||||| |||| |||||| |
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| T |
169108 |
ttg-agtagaaggagataatgggtatcagttactgaagagt |
169069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 93122 - 93266
Alignment:
| Q |
226 |
aaaaataaccctagattttaattgagggagaaagccagcggaaacaaatcattgacaagccccataaacaaaccacttatacaatcaaacattttaccaa |
325 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||| ||||| |||||||||| | || ||||||||||||||||||| |
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| T |
93122 |
aaaaataaccctagattttgattgagagagaaagccagcggaaaaaaatcgttgacaaaccccaaaaacaaaccattcatgcaatcaaacattttaccaa |
93221 |
T |
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| Q |
326 |
aattgatcaaaggaaaaacgtagtaaatgaacaattcatgaaatc |
370 |
Q |
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||||||| ||| |||||||||||| || |||||||||||||||| |
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| T |
93222 |
aattgataaaaaaaaaaacgtagtatataaacaattcatgaaatc |
93266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 93015 - 93100
Alignment:
| Q |
156 |
aacattaaacggacaaatttgttacattaatacttaattcttccccttttagtaaccttcacagtcaaacaaaaataaccctagat |
241 |
Q |
| |
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|||||||||| |||||||||||||||||||| | ||||||| ||||||||| ||| ||||||||||||||||| ||||||||||| |
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| T |
93015 |
aacattaaacagacaaatttgttacattaattcccaattctttcccttttagcaacattcacagtcaaacaaaagtaaccctagat |
93100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 541
Target Start/End: Original strand, 93733 - 93810
Alignment:
| Q |
464 |
tccattgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtattattggagtaggaggagataatgggta |
541 |
Q |
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||||||||| || ||||||| ||||||||||| ||| ||| ||||| ||| |||||||| ||| |||||||||||| |
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| T |
93733 |
tccattgtgtagggtttcttacttttactcaagaaaccataatgggtttatgtttggagtaagagaagataatgggta |
93810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 16179682 - 16179723
Alignment:
| Q |
307 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16179682 |
caatcaaacattttaccaaaattgatcaaaggaaaaacgtag |
16179723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 557
Target Start/End: Original strand, 16179871 - 16180011
Alignment:
| Q |
419 |
tgaatctgcaaaa-tactttagctttgctcggtctctcttgttaattccat--tgtgcagagtttcttgcttttactcaaaaaatgatagtgggtgtatt |
515 |
Q |
| |
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||||||||||||| ||||| ||| ||||| ||||||||| ||| ||||| |||||||||||||||||||| | | || ||| | |||||||| ||| |
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| T |
16179871 |
tgaatctgcaaaaatacttgagcgttgcttggtctctctcattacctccatattgtgcagagtttcttgctttcagtgaagaaacgttagtgggtatatg |
16179970 |
T |
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| Q |
516 |
attggagtaggaggagataatgggtatcaggtactcaagagt |
557 |
Q |
| |
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||| ||||| ||||||||||||||||||| |||| |||||| |
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| T |
16179971 |
tttg-agtagaaggagataatgggtatcagttactgaagagt |
16180011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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