View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_20 (Length: 298)
Name: NF12399_low_20
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 47581292 - 47581013
Alignment:
| Q |
8 |
agcagagagaaaacaatttaacaagatcaaattacagaattatgcatcaaatctatgtatatattcgttaaactaaatctgacatataacaaggtcataa |
107 |
Q |
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| T |
47581292 |
agcagagagaaaacaatttaacaagatcaaattacagaattatgcatcaaatctatgtataaattcgttaaactaaatctgacatataacaaggtcataa |
47581193 |
T |
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| Q |
108 |
tttaaataaattctccatgataaatgaaaattcttgcaaaagagaaataggtatatgaataaagagttgaaaagatgaatatgcat-----nnnnnnnnn |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47581192 |
tttaaataaattctccatgataaatgaaaattcttgcaaaagagaaataggtatatgaataaagagttgaaaagatgaatatgcataaaaaaaaaaaaaa |
47581093 |
T |
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| Q |
203 |
gaggaaattgagttaccttgtattatacacctgcaagaggagctagctaggcttttagctgccaaaatgaagcctgaatt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47581092 |
gaggaaattgagttaccttgtattatacacctgcaagaggagctagctaggcttttagctgccaaaatgaagcctgaatt |
47581013 |
T |
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