View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_22 (Length: 286)
Name: NF12399_low_22
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 17601633 - 17601868
Alignment:
| Q |
14 |
cacagaccaaagaaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaa |
113 |
Q |
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| T |
17601633 |
cacaaaccaaagaaacaaaacactaccaacaacaataacaatattaaggatatcttagcttcacttatgcttttagaagaagaagaaaccatagaacaaa |
17601732 |
T |
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| Q |
114 |
agaagtacttattagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17601733 |
agaagtacttattagattcacaacaacatagagatatgttcaattcaaatttcaacaaccaaacacaaaccatgaatcattacatggaagaacttcaaaa |
17601832 |
T |
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| Q |
214 |
ccattactctcagctagaccaacatcatcaaacaac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
17601833 |
ccattactctcagctagaccaacatcatcaaacaac |
17601868 |
T |
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