View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_23 (Length: 277)
Name: NF12399_low_23
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 37161188 - 37161451
Alignment:
| Q |
1 |
atatgcatatagttaaaagtatagaataaaatgaaataaaa-atgtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgatt |
99 |
Q |
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| T |
37161188 |
atatgcatatagttaaa-gtatagaataaaatgaaataaaaaatgtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgatt |
37161286 |
T |
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| Q |
100 |
cttccacgaagataaggatcaacggagagaaggagagtttcaacggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacgga |
199 |
Q |
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| T |
37161287 |
cttccacgaagataagggtcaacggaaagaaggagagtttcaactgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacgga |
37161386 |
T |
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| Q |
200 |
gtttaagatgatctgaggttggaacaccttcagtacaatatccagctaagtaccattctctgctt |
264 |
Q |
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| T |
37161387 |
gtttaagatgatctgaggttggaacaccttcagtggaatatccagctaagtaccattctctgctt |
37161451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 37155692 - 37155850
Alignment:
| Q |
106 |
cgaagataaggatcaacggagagaaggagagtttcaacggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaa |
205 |
Q |
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| T |
37155692 |
cgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaa |
37155791 |
T |
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| Q |
206 |
gatgatctgaggttggaacaccttcagtacaatatccagctaagtaccattctctgctt |
264 |
Q |
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| T |
37155792 |
gatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctctgctt |
37155850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 37150500 - 37150718
Alignment:
| Q |
40 |
aaatgtacctgattaagttgatattgtgaaatgaaaaggccttctgaggtaccagtgattcttccacgaagataaggatcaacggagagaaggagagttt |
139 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||| |||| |||||||| |||||||| |||||||||||||||| |
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| T |
37150500 |
aaatgtacctgattaagttgatattgtggaatgaaaaggccttcaagggtgccggtgattgttccgcgaagatatggatcaacagagagaaggagagttt |
37150599 |
T |
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| Q |
140 |
caacggctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaagatgatctgaggttggaacaccttcagtacaata |
239 |
Q |
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| T |
37150600 |
cgacgattagatggtcatcagggattgattcatgggcaagagaaagagaaacagtgcggagtttaagatgatccgacgttggaacaccctcaggagagta |
37150699 |
T |
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| Q |
240 |
tccagctaagtaccattct |
258 |
Q |
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| T |
37150700 |
tgcagctacgtaccattct |
37150718 |
T |
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