View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_25 (Length: 274)
Name: NF12399_low_25
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 5620813 - 5621062
Alignment:
| Q |
19 |
tgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggcttgatcttaaggttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620813 |
tgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggcttgatcttaaggttt |
5620912 |
T |
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| Q |
119 |
gtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttccgagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5620913 |
gtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttcccagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaac |
5621012 |
T |
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| Q |
219 |
acctgattcaattctctactcttatggactttccaccatgttctgtgcta |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5621013 |
acctgattcaattctctactcttatggactttccaccatgttcagtgcta |
5621062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 30635928 - 30635685
Alignment:
| Q |
19 |
tgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggc-ttgatcttaaggtt |
117 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| ||| |
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| T |
30635928 |
tgtaggactcatgcacttctgctttagagaaatatggtgttggttcatgtggcccccgtggattttatggaacaattggtaaggctttaatattaaagtt |
30635829 |
T |
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| Q |
118 |
tgtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttccgagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaa |
217 |
Q |
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| T |
30635828 |
tgtttttgaggaaatgcatgttc------tcttatgatacttttc-cctgtgcagatgtacatcttgactgtgaagcaagaatagcaaaatttttaggaa |
30635736 |
T |
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| Q |
218 |
cacctgattcaattctctactcttatggactttccaccatgttctgtgcta |
268 |
Q |
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| T |
30635735 |
cgcctgattcaattctatactcttatggactttccaccatgttcagtgcta |
30635685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 21424728 - 21424486
Alignment:
| Q |
19 |
tgtaggactcatgttcatctgctttagagaaatatggtgttggttcttgtggtccccgtgggttttatggaacaattggtaaggc-ttgatcttaaggtt |
117 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || || |||| ||| |
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| T |
21424728 |
tgtaggactcatgcacttctgctttagagaaatatggtgttggttcatgtggcccccgtggattttatggaacaattggtaaggctttaatattaaagtt |
21424629 |
T |
|
| Q |
118 |
tgtttttgaggaaatacttgttccctttaccttatgatgcttttcttcttccgagatgtccatcttgactgtgaagggagaatatcaaagtttttaggaa |
217 |
Q |
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||||||||||||||| | ||||| |||||||| |||| | | | | |||||| |||||||||||||||| |||||| |||| |||||| ||| |
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| T |
21424628 |
tgtttttgaggaaatgcatgttc------tcttatgatactttccctgtgc--agatgtacatcttgactgtgaagcaagaatagcaaaatttttacgaa |
21424537 |
T |
|
| Q |
218 |
cacctgattcaattctctactcttatggactttccaccatgttctgtgcta |
268 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
21424536 |
cgcctgattcaattctatactcttatggactttccaccatgttcagtgcta |
21424486 |
T |
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