View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12399_low_3 (Length: 534)

Name: NF12399_low_3
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12399_low_3
NF12399_low_3
[»] chr7 (16 HSPs)
chr7 (17-396)||(20167255-20167634)
chr7 (17-243)||(20244152-20244378)
chr7 (17-243)||(20248190-20248416)
chr7 (17-243)||(20264541-20264767)
chr7 (17-243)||(20232083-20232309)
chr7 (17-145)||(20295166-20295294)
chr7 (17-210)||(20274317-20274507)
chr7 (17-241)||(20285431-20285654)
chr7 (55-241)||(20280051-20280237)
chr7 (17-178)||(20061957-20062118)
chr7 (34-145)||(20289796-20289907)
chr7 (427-471)||(20167162-20167206)
chr7 (17-145)||(20304220-20304348)
chr7 (66-102)||(20004837-20004873)
chr7 (17-144)||(19939627-19939754)
chr7 (17-144)||(19970766-19970893)
[»] chr4 (1 HSPs)
chr4 (34-145)||(40823237-40823348)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 20167634 - 20167255
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20167634 catacatataggactattgtgtgcacaagaacttgccaaagataggcccgctatggctgcagtaatttctatgcttaacagtgaaactgcatcacttcct 20167535  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    ||||| ||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |    
T  20167534 cctcccagtaaacctgcattcatcctgagggagagtatgttaaattcaaagtttcctgaagaatgtcaaaatggttgttccatcaataatgtcagtatca 20167435  T
Q  217 cagacgtctgtggaagatagaacacaatgtttgagaggtcaatgaatatgtgtccaatgctataagttttgttaattgatatggcctgtagaaaaagtac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20167434 cagacgtctgtggaagatagaacacaatgtttgagaggtcaatggatatgtgtccaatgctataaattttgttaattgatatggcctgtagaaaaagtac 20167335  T
Q  317 taaattattttttggacgggatttgtccggaagtatattttcggccagctcgtttaaaaccctctctttatatgtaattt 396  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||||| || ||||||||    
T  20167334 taaattattttttggactggatttgtccgaaagtatactttcggccagctcatttaaaaccctctcttgatgtgtaattt 20167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 20244152 - 20244378
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20244152 catacatataggactattgtgtgcacaagaacttgccaaagataggcccactatggctgcagtaatttctatgcttaacagtgaaacttcattacttcct 20244251  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20244252 cctcctagtaaacctgcattcatcctgagggagaatatgttaaattcaaagttagctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 20244351  T
Q  217 cagacgtctgtggaagatagaacacaa 243  Q
    ||||| || |||| |||||| ||||||    
T  20244352 cagacatcagtggcagatagcacacaa 20244378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 20248190 - 20248416
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20248190 catacatataggactattgtgtgcacaagaacttgccaaagataggcccactatggctgcagtaatttctatgcttaacagtgaaacttcattacttcct 20248289  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    ||||||||||||||||||||||||||||| || | |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  20248290 cctcctagtaaacctgcattcatcctgagggagaatatgttaaattcaaagttagctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 20248389  T
Q  217 cagacgtctgtggaagatagaacacaa 243  Q
    ||||| || |||| |||||| ||||||    
T  20248390 cagacatcagtggcagatagcacacaa 20248416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 20264541 - 20264767
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    ||||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20264541 catacatattggactattgtgtgcacaagaacttgccaaagataggcccgctatggctgcagtaatttctatgcttaacagtgaaactgcatcacttcct 20264640  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||| ||||||||||||||||| || ||| ||||||||||||||||||    
T  20264641 cctcctagtaaacctgcattcatcctgagggagagtatgttaaattcaaagttgcccgaagaatgtcaaaatggctgctccatcaataatgtcagtatta 20264740  T
Q  217 cagacgtctgtggaagatagaacacaa 243  Q
    ||||| || |||| |||||| ||||||    
T  20264741 cagacatcagtggcagatagcacacaa 20264767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 20232083 - 20232309
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||    
T  20232083 catacatataggactattgtgtgcacaagaacgtgccggagataggcccactatggcttcagtaatttctatgcttaacagtgaaagttcattacttcct 20232182  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    ||||||||||||||||||||||| ||| | || |||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||| |    
T  20232183 cctcctagtaaacctgcattcattctgtgggagagtatgttaaattcaaagtttcctgaagaatgtcaaaatggttgttccatcaataatgtcagtatca 20232282  T
Q  217 cagacgtctgtggaagatagaacacaa 243  Q
    ||||| || |||| |||||| ||||||    
T  20232283 cagacatcagtggcagatagcacacaa 20232309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 20295166 - 20295294
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| || ||||| |  ||||||| |||  | ||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  20295166 catacatataggacttttgtgcgttcaagaacatgctgtggataggcccgctatggctgcagtaatttctatgcttaacagtgaggctgcattacttcct 20295265  T
Q  117 cctcctagtaaacctgcattcatcctgag 145  Q
    |||||||||||||||||||||||||||||    
T  20295266 cctcctagtaaacctgcattcatcctgag 20295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 20274317 - 20274507
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||| ||||| ||  |||||| ||||||| ||||  ||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||   |    
T  20274317 catacacataggacttctgtgtgtacaagaaattgctgtagataggcccactatggctgcagtgatttctatgctgaacagtgaaggtgcattact---t 20274413  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtca 210  Q
     |||| |||||||||||||||||||||||  | | |||||| |||||||| ||||||||||||||| ||| || | ||||| |||| |||||||    
T  20274414 gctcccagtaaacctgcattcatcctgaggcagaatatgttgaattcaaactggcctgaagaatgtaaaagtgttagttccatcaacaatgtca 20274507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 20285431 - 20285654
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| || ||||| | |||||||| |||  |||||||||||| ||||||||| |||||||||||||||||||  ||  ||||||||||| ||    
T  20285431 catacatataggacttttgtgcgtacaagaacatgctgtagataggccca-tatggctgcggtaatttctatgcttaacaacgatgctgcattactttct 20285529  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtatta 216  Q
    | ||| ||||||||||||||||||||||   | | || ||| ||| ||||||||| |||||||| | ||| || | ||||  |||| |||||||||||||    
T  20285530 cgtccgagtaaacctgcattcatcctgatgaagaatacgttgaatccaaagtggcatgaagaatatgaaagtgttagttctatcaacaatgtcagtatta 20285629  T
Q  217 cagacgtctgtggaagatagaacac 241  Q
    ||||  || |||| |||||| ||||    
T  20285630 cagaaatccgtggcagatagcacac 20285654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 20280051 - 20280237
Alignment:
Q  55 tagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcctcctcctagtaaacctgcattcatcctgagagaaagtat 154  Q
    |||| ||||| | ||||||| ||||||||||||||||||||| |||   ||||| |||||||||||| ||| |||||||||||||||| ||  |   |||    
T  20280051 tagacaggcctaatatggctacagtaatttctatgcttaacaatgaggttgcatcacttcctcctccaagtcaacctgcattcatcctaaggcagtatat 20280150  T
Q  155 gttaaattcaaagtggcctgaagaatgtcaaaatggttgttccgtcaataatgtcagtattacagacgtctgtggaagatagaacac 241  Q
    ||| |||||||||| ||||||||||  ||||| ||  |||||| | ||||||||||||||||||||  | ||||| |||||| ||||    
T  20280151 gttgaattcaaagtcgcctgaagaaaatcaaattgtctgttccattaataatgtcagtattacagatttatgtggtagatagcacac 20280237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 20062118 - 20061957
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| || || |||| |||||||   ||| |||| ||||| | ||||||| |||||||||||||||||||||||||   ||||| |||||||    
T  20062118 catacatataggactgttatgtgtacaagaatcggccgtagacaggcctaatatggctacagtaatttctatgcttaacagtgaggttgcatcacttcct 20062019  T
Q  117 cctcctagtaaacctgcattcatcctgagagaaagtatgttaaattcaaagtggcctgaaga 178  Q
    ||||| ||| |||||||||||||||||||  | | | |||| ||||||||||  ||||||||    
T  20062018 cctccaagtcaacctgcattcatcctgaggcagaatttgttgaattcaaagtcacctgaaga 20061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 20289796 - 20289907
Alignment:
Q  34 tgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcctcctcctagtaaacctgc 133  Q
    |||||| |||||| |||||  |||| ||||| | |||||||||||||||||||||||||||||| ||  ||| ||||||||||||||| ||| |||||||    
T  20289796 tgtgtgtacaagagcttgctgtagacaggcctaatatggctgcagtaatttctatgcttaacagcgaggctgaattacttcctcctccaagtcaacctgc 20289895  T
Q  134 attcatcctgag 145  Q
    ||| ||| ||||    
T  20289896 atttatcttgag 20289907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 20167206 - 20167162
Alignment:
Q  427 caataagaaaagagagatccctctctttgaaaatgtatcatacta 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20167206 caataagaaaagagagatccctctctttgaaaatgtatcatacta 20167162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 20304220 - 20304348
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||||||||| || || |||| |||||||   ||  ||||||| || ||||||||  |||||||||||||||||| ||||||   |||||| ||||||    
T  20304220 catacatataggactgttatgtgtacaagaatcagctgtagatagacctactatggcgacagtaatttctatgcttatcagtgaggatgcatttcttcct 20304319  T
Q  117 cctcctagtaaacctgcattcatcctgag 145  Q
    ||||| ||| |||| ||||||||||||||    
T  20304320 cctccaagtcaaccagcattcatcctgag 20304348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 20004873 - 20004837
Alignment:
Q  66 actatggctgcagtaatttctatgcttaacagtgaaa 102  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20004873 actatggctgcagtgatttctatgcttaacagtgaaa 20004837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 19939627 - 19939754
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||| ||||||||  | |||| ||| ||| || ||||||| || || || ||||| || |||||||||||||| |||||||| | || |   ||||||    
T  19939627 catacacatagggcttctatgtgtacaggaattttccatagacagacctaccatggcggctgtaatttctatgctgaacagtgacattgtagatcttcct 19939726  T
Q  117 cctcctagtaaacctgcattcatcctga 144  Q
    ||||| |  |||||||||||||||||||    
T  19939727 cctccaaagaaacctgcattcatcctga 19939754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 19970766 - 19970893
Alignment:
Q  17 catacatatagggctattgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcct 116  Q
    |||||| ||||||||  | |||| ||| ||| || ||||||| || || || ||||| || |||||||||||||| |||||||| | || |   ||||||    
T  19970766 catacacatagggcttctatgtgtacaggaattttccatagacagacctaccatggcggctgtaatttctatgctgaacagtgacattgtagatcttcct 19970865  T
Q  117 cctcctagtaaacctgcattcatcctga 144  Q
    ||||| |  |||||||||||||||||||    
T  19970866 cctccaaagaaacctgcattcatcctga 19970893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 40823348 - 40823237
Alignment:
Q  34 tgtgtgcacaagaacttgccatagataggcccactatggctgcagtaatttctatgcttaacagtgaaactgcattacttcctcctcctagtaaacctgc 133  Q
    |||||| |||||| |||||  |||| ||||| | |||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||    
T  40823348 tgtgtgtacaagagcttgctgtagacaggcctaatatggcagcagtaatttctatgcttaacagtgagactgaattacttcctcctccaagtcaacctgc 40823249  T
Q  134 attcatcctgag 145  Q
    ||| ||| ||||    
T  40823248 atttatcttgag 40823237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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