View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_4 (Length: 534)
Name: NF12399_low_4
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Original strand, 27922735 - 27923238
Alignment:
| Q |
15 |
gccctgataagtgttgagcaaacatcaccatggacatcccaccggaaagaagagactccaaacagtcaatggagtgatcacaactttctcacatgcatgt |
114 |
Q |
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|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
27922735 |
gccctgataagtgtcgaacaaacatcaccatggacatcccaccggaaagaagagactccaaacagtcaatggagtgatcacaactctctcacatg----t |
27922830 |
T |
|
| Q |
115 |
ttcatctttaacccgacacattacaccctaccattctattgtttcttacgaaaggagacgcgcttcaagcggaa-gacgagtgtgagaccacattctctt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
27922831 |
ttcatctttaacccgacacattacaccctaccattctattgtttcttacgaaaggagacgcacttcaagcggaccgacgagtgtgagaccacattctctt |
27922930 |
T |
|
| Q |
214 |
ggttaaag----ttcaatctcaactcccgataatttcaagactggaccccatagagaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgt |
309 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27922931 |
ggttaaagaaagttcaatctcaacccccgataatttcaagactggaccccatagagaaacaatttgtttatatagttgtttcaaaaaaggaagccagtgt |
27923030 |
T |
|
| Q |
310 |
tgtcctaaccaggaaggacgatgaaacccaacactaggtatactttatgaacaaagtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgcc |
409 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27923031 |
tgtcctaaccagggaggacgatgaaacccaacactaggtatactttatgaacaaagtactcaaagggaccgaggtaagacaaaaaatcgaaaaggttgcc |
27923130 |
T |
|
| Q |
410 |
ttagccctgatgacacctacgagaaagctttgtcgagacttcatggcctaccctactgtggtgtggattaaccaacccattaaacacatgttattcatac |
509 |
Q |
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||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27923131 |
ttagccctgatgatacctacaagaaagctttgtcgagacttcatggcctaccctactgtggtgtggattaaccaacccattaaacacatgttgttcatac |
27923230 |
T |
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| Q |
510 |
cagatttt |
517 |
Q |
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| T |
27923231 |
cagatttt |
27923238 |
T |
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