View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_6 (Length: 478)
Name: NF12399_low_6
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 468
Target Start/End: Complemental strand, 7345932 - 7345485
Alignment:
| Q |
16 |
gtggcttcgcgagcaagagcatgtgctaccacgttagcttgtcgtcggttaaactccaccctatagtttgtaaaagaggaggacaaagtattctgacatg |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||| || |
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| T |
7345932 |
gtggcttcacgagcaagagcatgtgctaccacgttagcttgtcgccggttaaactccaccctagagtttgtgaaagaggaggacaaagtattctgacgtg |
7345833 |
T |
|
| Q |
116 |
ctgcaattatttggtcgaactcaataaaatcatctatgttcgataagatagcacctgctgttaattttaagtcgactacagaatccacgttgtcaaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
7345832 |
ctgcaattatttggtcgaactcaataaaatcatctatgttcgataagatagcacctgctgttaattttaagtcgactacaaaattcacgttgtcaaacca |
7345733 |
T |
|
| Q |
216 |
catgtcacgtatccattgtaaagcatgaaaaagagctagtgcttcacttcacctacgtggacagcaaccaatggagagagctagggttcaatagtttgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7345732 |
catgtcacgtatccattgtaaagcatgaaaaagagctagtgct-----tcacctacttggacagcaaccaagcgagagagctagggttcaatagtttgaa |
7345638 |
T |
|
| Q |
316 |
agtaagttaaagtgattactttttggcaatttttattaaaccgaaagatcatacgtgtttgtttatgataattaannnnnnnnnnnnnnnnnnnnnncgt |
415 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
7345637 |
agtaagttaaagtgattattttttggcaatttttattaaaccggaggatcatacgtgtttgtttatgataattaaatttattttttatattttatttcgt |
7345538 |
T |
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| Q |
416 |
cataaaatcaatattgttttaaactagattcggtaacaggttaatggtgatga |
468 |
Q |
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| T |
7345537 |
cataaaatcaatattgttttaaactagattcggtaacaagttaatggttatga |
7345485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 49077419 - 49077175
Alignment:
| Q |
16 |
gtggcttcgcgagcaagagcatgtgctaccacgttagcttgtcgtcggttaaactccaccctatagtttgtaaaagaggaggacaaagtattctgacatg |
115 |
Q |
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|||||||| ||||||||| |||||| |||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
49077419 |
gtggcttcacgagcaagaccatgtgataccacgttagcttgtcgccgattaaactccaccctagagtttgtgaaagaggaggacaaagtattatgacatg |
49077320 |
T |
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| Q |
116 |
ctgcaattatttggtcgaactcaataaaatcatctatgttcgataagatagcacctgctgttaattttaagtcgactacagaatccacgttgtcaaacca |
215 |
Q |
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|||||||||||||| |||||||| ||| || || |||||||||||||| || ||||||| | |||| ||||||||||| |||||||||||||||| | |
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| T |
49077319 |
ctgcaattatttggccgaactcagtaacattcactttgttcgataagatatcatctgctgtaatttttgagtcgactacaaaatccacgttgtcaaaacg |
49077220 |
T |
|
| Q |
216 |
catgtcacgtatccattgtaaagcatgaaaaagagctagtgcttc |
260 |
Q |
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| T |
49077219 |
catgtcgcatagccattgtaaagcatgaaaaagagctagtgcttc |
49077175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 46884770 - 46884873
Alignment:
| Q |
26 |
gagcaagagcatgtgctaccacgttagcttgtcgtcggttaaactccaccctatagtttgtaaaagaggaggacaaagtattctgacatgctgcaattat |
125 |
Q |
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|||||| |||||| |||| ||| || |||||||| || |||||||| ||||| ||||||| ||||| || || | ||||| ||||||| ||||||||| |
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| T |
46884770 |
gagcaacagcatgagctatcacattggcttgtcgccgattaaactctaccctggagtttgtgaaagatgaagaaagagtatcttgacatgatgcaattat |
46884869 |
T |
|
| Q |
126 |
ttgg |
129 |
Q |
| |
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|||| |
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| T |
46884870 |
ttgg |
46884873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 29358650 - 29358431
Alignment:
| Q |
42 |
taccacgttagcttgtcgtcggttaaactccaccctatagtttgtaaaagaggaggacaaagtattctgacatgctgcaattatttggtcgaactcaata |
141 |
Q |
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|||||||||| ||| ||| || |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || |
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| T |
29358650 |
taccacgttaacttatcgccgattaaactccagactagagtttgtgaaagaggaggacaaagtattctgacatgctgcaattatttggccgaactcagta |
29358551 |
T |
|
| Q |
142 |
aaatcatctatgttcgataagatagcacctgctgttaattttaagtcgactacagaatccacg-ttgtcaaaccacatgtcacgtatccattgtaaagca |
240 |
Q |
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| ||| || ||||||||||||||||| ||| ||| | |||| | ||||||||| |||| ||| || |||||||||||||||| ||| |||||||||||| |
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| T |
29358550 |
acatccactctgttcgataagatagcatctggtgtaatttttgaatcgactacaaaatctacgtttctcaaaccacatgtcacttattcattgtaaagca |
29358451 |
T |
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| Q |
241 |
tgaaaaagagctagtgcttc |
260 |
Q |
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|| ||||||||||| ||||| |
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| T |
29358450 |
tggaaaagagctagggcttc |
29358431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 24101676 - 24101759
Alignment:
| Q |
54 |
ttgtcgtcggttaaactccaccctatagtttgtaaaagaggaggacaaagtattctgacatgctgcaattatttggtcgaactc |
137 |
Q |
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||||||||| |||||||| |||||| ||| ||| ||| |||||| | ||| |||||||||||||||||||||| || |||||| |
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| T |
24101676 |
ttgtcgtcgattaaactcaaccctagagtatgtgaaactggaggaaagagtgttctgacatgctgcaattattttgtagaactc |
24101759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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