View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12399_low_8 (Length: 431)
Name: NF12399_low_8
Description: NF12399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12399_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 23829768 - 23830167
Alignment:
| Q |
18 |
attccacgtcgtaaacatttgtgttacttaataaattgtagatatcttactgtagttaatgtatgagaactaaatttttcttggacattctgcttgttga |
117 |
Q |
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| T |
23829768 |
attccacgtcgtaaacatttgtgttacttaataaattgtagatatcttactatagttaatgtatgagaactaaatttttcttggacattctgcttgttga |
23829867 |
T |
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| Q |
118 |
tagtgcatatgtcaaagaataattggattttttggtgttttaacagcacaaataactagcattgctagtgcttttgcatgtttatcttgttagctcaatt |
217 |
Q |
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| T |
23829868 |
tagtgcatatgtcaaagaataattggattttttggtgttttaacagcacaaataactagcattgctagtgcttttgcatgtttatcttgttaactcaatt |
23829967 |
T |
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| Q |
218 |
attatagttaattttgatacattgtttcctaatgttggaacccttaccataactgtcaagctttatcttttagttgctaacnnnnnnncatgagaatgaa |
317 |
Q |
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| T |
23829968 |
attatagttaattttgatacattgtttcctaatgttggaacccttaccataactgtcaagctttatcttttagttgctaactttttttcatgagaatgaa |
23830067 |
T |
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| Q |
318 |
aacaaaataaacaaggacaacaaagaaaagcaaactgcatttgcggatgagcaacgcctatagcatcaacagtcaaaacacgactaagctgacgagcaca |
417 |
Q |
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| T |
23830068 |
aacaaaataaacaagaacaacaaagaaaagcaaactgcattcgcggatgagcaacgcctatagcatcaacagtcaaaacacgactaagctgacgagcaca |
23830167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 23820626 - 23820808
Alignment:
| Q |
39 |
tgttacttaataaattgtagatatcttactgtagttaatgtatgagaactaaatttttcttggacattctgcttgttgatagtgcatatgtcaaagaata |
138 |
Q |
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| T |
23820626 |
tgttactcaatagattgtacatatcttactatagctaatgtttgagaactaaacttctcttggaaattctgtttgatgagagtgcctaagtctatgaata |
23820725 |
T |
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| Q |
139 |
attgg-attttttggtgttt--------taacagcacaaataactagcattgctagtgcttttgcatgtttatcttgttagctca |
214 |
Q |
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| T |
23820726 |
gttggaattttttggtatttgtaaattgtaacagc-taaataact-gcattgctagtgcttttgtatgtttatcttgctagctca |
23820808 |
T |
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