View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240-INSERTION-10 (Length: 641)
Name: NF1240-INSERTION-10
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-10 |
 |  |
|
| [»] chr8 (12 HSPs) |
 |  |
|
| [»] scaffold0065 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 5 - 641
Target Start/End: Complemental strand, 3003486 - 3002851
Alignment:
| Q |
5 |
agtttggtgttgtcataagaagaaaacataatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacat |
104 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3003486 |
agtttgatgtcgtcataagaagaaaacataatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctacggatacat |
3003387 |
T |
 |
| Q |
105 |
gcacaggtcttcctataaatctttttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcatttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003386 |
gcacaggtcttcctataaatctttttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcatttt |
3003287 |
T |
 |
| Q |
205 |
aaaatcttgtatgtcaccatctagattcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcag |
304 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3003286 |
aaaatcttgtatatcaccatctagattcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttccatgcag |
3003187 |
T |
 |
| Q |
305 |
tgcttttcaattgaacattcaagataaccttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataag |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3003186 |
tgcttttcaattgaacattcaagataaccttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataag |
3003087 |
T |
 |
| Q |
405 |
caaaacattgtctctgttgaaatgacaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3003086 |
caaaacattgtctctgttgaaatgacaaattttggtaactcaattttaggaccggcaaaatggtaccgttatcctcacacaatttccaaaattcaccttg |
3002987 |
T |
 |
| Q |
505 |
taagacatcgatccattccctttcttcacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3002986 |
taagacatcgatccattccctttcttcacttttattttgtaatatgcctcccaattatctaattgctaatggaactcctctgcactttttcactatcttc |
3002887 |
T |
 |
| Q |
605 |
ttaccnaattgactcaasantttgattcactccaatg |
641 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
3002886 |
ttacc-aattgactcaagagtttgattcactccaatg |
3002851 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 29 - 641
Target Start/End: Original strand, 9850073 - 9850684
Alignment:
| Q |
29 |
aacataatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatcttt |
128 |
Q |
| |
|
||||||||||| ||||| || | ||| |||||| |||||||||||| |||| || |||||||| | ||||||||||||||||||||| | |||||| |
|
|
| T |
9850073 |
aacataatcaaagttcgaagtcgactaacatccattgattccaacaaacaaaacgcttcaaattccagagatacatgcacaggtcttcctggacatcttt |
9850172 |
T |
 |
| Q |
129 |
ttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctag |
228 |
Q |
| |
|
||| | || ||||||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||||||||| ||||| | | ||| ||||||||| |
|
|
| T |
9850173 |
ttgccgtactatccaagtaacaacaatcgtttccagctacttgtgttgcaagatcgtgcatcaaatcatgcattctaaaaccatttatatcaccatcttt |
9850272 |
T |
 |
| Q |
229 |
attcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaaga |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| | | ||||| |||||| |||||| |
|
|
| T |
9850273 |
attcaattttgcatcttggaagaatgatttcatcaagaaaatattaacaaattggttaccaacatcttccatgctcttcccttcaactgaacagtcaaga |
9850372 |
T |
 |
| Q |
329 |
taaccttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatg |
428 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||| |||||| | |
|
|
| T |
9850373 |
taaccatgcgccatccacattcgaatcaactcatccttctcaaattcccaatccttaggatataaagagcaataagcaaaacattgtctttgttgaggcg |
9850472 |
T |
 |
| Q |
429 |
acaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttc |
528 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| | ||||||| |||||| ||| |||||||||| |
|
|
| T |
9850473 |
acaagttatggtaactcaattttaggaccggcatgatgctatctttatcctcacacaagttccaaaaatttccttgtaggacatcaatcaattccctttc |
9850572 |
T |
 |
| Q |
529 |
ttcacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaattgactcaasantttg |
628 |
Q |
| |
|
|||||||||| || ||||||||||||| || |||||||||||||||| ||||||| ||||||||| | |||||||| |||| |||||| |||| || |
|
|
| T |
9850573 |
ttcacttttactttgtaatatgcctcctaacgatctaattgctaatggaactcctttgcacttttccgctatcttcctacc-aattgattcaatggttct |
9850671 |
T |
 |
| Q |
629 |
attcactccaatg |
641 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9850672 |
attcactccaatg |
9850684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 641
Target Start/End: Original strand, 2710262 - 2710873
Alignment:
| Q |
29 |
aacataatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatcttt |
128 |
Q |
| |
|
|||| |||||| |||||||||||||||| |||||| |||||||||| |||| |||||| |||| ||| ||| ||||||||||||||||| | |||||| |
|
|
| T |
2710262 |
aacacaatcaaagttcgcagcctacttgaatccaacgattccaacatacaaaaggcatcagattccactaatatatgcacaggtcttcctagacatcttt |
2710361 |
T |
 |
| Q |
129 |
ttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctag |
228 |
Q |
| |
|
||| | || |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| | || |||||||| |
|
|
| T |
2710362 |
ttgccctactatccaagtaacaacaatcattgccagctacttgtgttgcaagatcgtgcattaaatcatgcattttaaaaccagatacatcaccatcgtc |
2710461 |
T |
 |
| Q |
229 |
attcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaaga |
328 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| ||||||| ||||| |
|
|
| T |
2710462 |
attcaattctgcatcttggaagaatgaattcatcaagaaaatatttacaaattgattaccaacatcttccatgcattgctcttcaactgaacatccaaga |
2710561 |
T |
 |
| Q |
329 |
taaccttgcgccatccacatttgaatcaactcgtccttct-caattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaat |
427 |
Q |
| |
|
|| ||||| || |||||||||||||| ||||| ||||||| ||||| || |||| | |||| ||| || |||||||||||||||||||| |||||| |
|
|
| T |
2710562 |
tatccttgtgctatccacatttgaattaactcatccttcttcaatttcc-aatcttgaggaaatatagagcaataagcaaaacattgtctttgttgaggc |
2710660 |
T |
 |
| Q |
428 |
gacaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattcccttt |
527 |
Q |
| |
|
||||| || | ||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2710661 |
gacaagttattgtaactcaattttaggaccggcatgatgctatctttatcctcgcacaatttccaaaagtcaccttgtaagacatcgatccactcccttt |
2710760 |
T |
 |
| Q |
528 |
cttcacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaattgactcaasanttt |
627 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||||||||| || ||||| |||| | ||| |
|
|
| T |
2710761 |
cttcccttttacttcgtaatatgcctcccagtgatctaattgctaatggaactcctttgcacttttctgctatcttctttcc-aattggttcaagagttt |
2710859 |
T |
 |
| Q |
628 |
gattcactccaatg |
641 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
2710860 |
ggttcactccaatg |
2710873 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 621
Target Start/End: Complemental strand, 2981372 - 2980781
Alignment:
| Q |
29 |
aacataatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatcttt |
128 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||||||| |||| ||||| ||| | ||||||||||||||||||||||| | |||||| |
|
|
| T |
2981372 |
aacataatcaaagtacgcagcctacttgaatccaatgattccaacatacaaaaggcatcccatttcaatgatacatgcacaggtcttcctagacatcttt |
2981273 |
T |
 |
| Q |
129 |
ttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctag |
228 |
Q |
| |
|
||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||||| | | ||| ||||||| |
|
|
| T |
2981272 |
ttgccttactatccaagtaacaacaatcattgccagctacttgtgttgcaagatcgtgcattaaatcgtgcattttaaaaccatctatatcaccatggta |
2981173 |
T |
 |
| Q |
229 |
attcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaaga |
328 |
Q |
| |
|
||||| | ||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||||| ||||| |||||||||| ||||| |||||| |
|
|
| T |
2981172 |
attcattgttgcatcttggaagaatgaattcttcaagaaaatatttacaaattgattaccaacatctttcatgcattgcttttcaactgaaccgtcaaga |
2981073 |
T |
 |
| Q |
329 |
taaccttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatg |
428 |
Q |
| |
|
|||||||| ||||||||||||||||| || || |||||| || | |||||||| ||| |||||| ||||||||||||||||| || |||||| || |
|
|
| T |
2981072 |
taaccttgtgccatccacatttgaattaattcatccttcataaatttccaatcctggggaaataaagagcaataagcaaaacattgcctttgttgaggtg |
2980973 |
T |
 |
| Q |
429 |
acaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttc |
528 |
Q |
| |
|
|||| || | |||||||||| ||||||| ||||| ||| |||| |||||||| |||||||||||||| |||||||||||||| || ||||| |||||||| |
|
|
| T |
2980972 |
acaagttatagtaactcaatcttaggactggcaagatgctatctttatcctcgcacaatttccaaaagtcaccttgtaagacttcaatccactccctttc |
2980873 |
T |
 |
| Q |
529 |
ttcacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaattgactcaa |
621 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
2980872 |
ttcccttttgctttgtaatatgcctcccaatgatcttattgctaatggaactcctttgcacttttctgctatcttctcacc-aattgactcaa |
2980781 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 34 - 639
Target Start/End: Complemental strand, 2990472 - 2989865
Alignment:
| Q |
34 |
aatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatctttttgac |
133 |
Q |
| |
|
|||||| || |||| |||||||| ||||| ||||||||||| | || |||||| || ||| |||||||||| |||||||||| | || | |||| | |
|
|
| T |
2990472 |
aatcaaagtccgcaacctacttgaatccagggattccaacaaacacaaggcatcatgtttcactaatacatgcacgggtcttcctaaacatttgtttgcc |
2990373 |
T |
 |
| Q |
134 |
ttatt---atccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagat |
230 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||| || |
|
|
| T |
2990372 |
ttacttgaatccaagtaacaacaatcattgccagctacttgtgttgcaagatcatgcattaaatcatgcattttaaaaccagttacatcaccatcatcat |
2990273 |
T |
 |
| Q |
231 |
tcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagata |
330 |
Q |
| |
|
| || |||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| || ||||||| |||||| ||||||| |
|
|
| T |
2990272 |
taaaatttgcatcttggaagaatgaattcttcaagaaaatatttacaaattgattaccaacatcttccatgcattgattttcaactgaacaaccaagata |
2990173 |
T |
 |
| Q |
331 |
accttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgac |
430 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||| | ||||||||| |||| |||||| ||||||||||||||||| || |||||| ||| |
|
|
| T |
2990172 |
accttgtgccatccacatttgaattaactcatccttctcaaattcccaatcctgaggaaataaagagcaataagcaaaacattgcctttgttgaggtgat |
2990073 |
T |
 |
| Q |
431 |
aaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttctt |
530 |
Q |
| |
|
|| || ||||||||||||||||||||||||| ||| ||| | | | ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
2990072 |
aagttctggtaactcaattttaggaccggcatgatgctattttcaccatcacacaatttccaacattcaccttgtaagacattgatccattcactttctt |
2989973 |
T |
 |
| Q |
531 |
cacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaattgactcaasantttgat |
630 |
Q |
| |
|
||||| | |||||||||||||||| | ||||||||||||||| | ||||||| ||||||||| ||||||||||||| |||||| |||| | ||| | |
|
|
| T |
2989972 |
tactttcacttcgtaatatgcctcctagtgatctaattgctaacggaactcctttgcacttttctgctatcttcttacc-aattgattcaagaggttggt |
2989874 |
T |
 |
| Q |
631 |
tcactccaa |
639 |
Q |
| |
|
||||||||| |
|
|
| T |
2989873 |
tcactccaa |
2989865 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 138 - 593
Target Start/End: Complemental strand, 13792308 - 13791853
Alignment:
| Q |
138 |
tatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaattt |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||| ||| || |||||| | || ||| |
|
|
| T |
13792308 |
tatccaagtaacaacaatcattgccagctactttcattgcaagatcatgcattaaattatgcattttgaaactaactatatctccatctccacccacttt |
13792209 |
T |
 |
| Q |
238 |
tgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgc |
337 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||| |||||||||| |||||| ||||||| ||| || |||||| || |||||||||||||| || |
|
|
| T |
13792208 |
tgcatcttggaaaaatgactttatcaacaaaatcttcacaaattcgttaccggcatcttccatgagttgtttttcatctgtgcattcaagataaccctgt |
13792109 |
T |
 |
| Q |
338 |
gccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaatttt |
437 |
Q |
| |
|
|||||||| | |||||||||| | |||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
13792108 |
gccatccaaagttgaatcaacgcatccttctcaatttcccaatccttgggatataaagagcaataagcaaaacattgtctcaattgaagcgacaaacttt |
13792009 |
T |
 |
| Q |
438 |
ggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcactttt |
537 |
Q |
| |
|
||||||| ||||| |||| | | | ||| | || || || || || |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13792008 |
ggtaactaaatttcaggattgacgagatgctttctttgtcttcgcataattcccaaaagtcaccttgtaagacatcgatccattccctttcttcactttt |
13791909 |
T |
 |
| Q |
538 |
atttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttt |
593 |
Q |
| |
|
|| | | || ||||||||| | ||||||||||| || |||||| ||||||||| |
|
|
| T |
13791908 |
cctttgcagtaagcctcccaaagttctaattgctagtggaactcccatgcactttt |
13791853 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 152 - 593
Target Start/End: Original strand, 3281600 - 3282041
Alignment:
| Q |
152 |
caatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaattttgcatcttggaaga |
251 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||| |||||||| ||| || ||||||||| | | ||||||||||||||| | |
|
|
| T |
3281600 |
caatcattaccagctacttgtgttgcaagatcatgcattaaattgtgcattttgaaactaactaactcaccatcttcaccctcttttgcatcttggaaaa |
3281699 |
T |
 |
| Q |
252 |
atgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaat-tgaacattcaagataaccttgcgccatccacattt |
350 |
Q |
| |
|
|||| || ||||||| ||| |||||||||| |||||| |||||||| | | ||| ||| | || ||| ||||||||||||||||| |||||||| | || |
|
|
| T |
3281700 |
atgactttatcaagagaatcttcacaaattcgttaccgacatcttccagg-agttgtttaccatctgagcattcaagataaccttgtgccatccaaagtt |
3281798 |
T |
 |
| Q |
351 |
gaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttggtaactcaattt |
450 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||| ||| || ||||||||||||||||||||| ||| |||||| ||||||||| |||| | |
|
|
| T |
3281799 |
gaatcaacatatccttctcgatttcccaatccttaggaaatagagagcaataagcaaaacattgtctcaaccgaagcgacaaactttggtaacccaatgt |
3281898 |
T |
 |
| Q |
451 |
taggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcacttttatttcgtaatatg |
550 |
Q |
| |
|
|||| | || ||| | | | || ||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| |||||| | |||||| | |
|
|
| T |
3281899 |
caggatcaacatgatgcttttttcgtcttcacatgattcccaaaattcgccttgtaagacattgatccattccctttctttgcttttactctgtaatagg |
3281998 |
T |
 |
| Q |
551 |
cctcccaatgatctaattgctaatgnaactcctctgcactttt |
593 |
Q |
| |
|
|||||||||| | ||||||||| || |||||| ||||||||| |
|
|
| T |
3281999 |
cctcccaatgttttaattgctagtggaactcccatgcactttt |
3282041 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 139 - 593
Target Start/End: Original strand, 2910253 - 2910707
Alignment:
| Q |
139 |
atccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaatttt |
238 |
Q |
| |
|
||||||| |||| ||||| | || |||||||| |||| |||||||| ||||||||||||||||| ||| | ||| ||||||||| || || ||| |
|
|
| T |
2910253 |
atccaaggaacagcaatctattcctgctacttgcattgctagatcatgaattaaatcatgcattttgaaactatatatatcaccatcttcatccattttc |
2910352 |
T |
 |
| Q |
239 |
gcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcg |
338 |
Q |
| |
|
|||||||| || ||||| || |||||||||| ||||| ||||||||||||| |||||| || | |||| || || |||||||||||||| | |
|
|
| T |
2910353 |
gcatcttgaaaaaatgactttgtcaagaaaattttcacgaattggttaccaatatcttcattgagctcaacttcaggcgagcaatcaagataaccttgtg |
2910452 |
T |
 |
| Q |
339 |
ccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttg |
438 |
Q |
| |
|
| || || | |||||||||||| |||||||| ||| |||||||||||||||||| || ||||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
2910453 |
caatgcatagttgaatcaactcatccttctctatttcccaatccttaggatatatagagcaatatgcaaaacattgtctctgttgaggtgacaagttttg |
2910552 |
T |
 |
| Q |
439 |
gtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcactttta |
538 |
Q |
| |
|
|||||||| ||| || ||||||| ||| ||| | || | || ||| ||||||| |||||||||||||||| | ||||||| |||| || ||| ||| |
|
|
| T |
2910553 |
gtaactcagtttcagaaccggcacgatgctattttcgtcttggcataatctccaaaagtcaccttgtaagacattgttccattcactttgtttactctta |
2910652 |
T |
 |
| Q |
539 |
tttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttt |
593 |
Q |
| |
|
| | |||| |||||| |||| |||||| |||| || ||| || |||||||||| |
|
|
| T |
2910653 |
ccttgcaataggcctcctaatgttctaatagctagtggaaccccactgcactttt |
2910707 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 537
Target Start/End: Original strand, 3141346 - 3141644
Alignment:
| Q |
239 |
gcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcg |
338 |
Q |
| |
|
||||||||||| || || |||||||| ||||| |||||||||||||||| | ||||| |||| ||||||||| |||||||| ||||||||||| | |
|
|
| T |
3141346 |
gcatcttggaaaaaagacttcatcaataaaatcgtcacaaattggttaccgatgtcttccatgcgctgcttttcatcagaacattcgagataaccttgtg |
3141445 |
T |
 |
| Q |
339 |
ccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttg |
438 |
Q |
| |
|
||||||| | |||||||||||| |||||||| ||| |||||| |||| |||||||| || || ||||||||||| | ||||| ||||| ||||| |
|
|
| T |
3141446 |
ccatccatagttgaatcaactcatccttctctattttccaatctttagtatataaagagcagtaggcaaaacattgccgtagttgaggagacaagttttg |
3141545 |
T |
 |
| Q |
439 |
gtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcactttt |
537 |
Q |
| |
|
|||||||| ||| | ||||||| ||| | || | || ||||| ||||||||||| ||||||||||| ||||| |||||||| ||||||||| |||| |
|
|
| T |
3141546 |
gtaactcagtttcaacaccggcatgatgctttcttcgtcttcacataatttccaaaagtcaccttgtaaaacatcaatccattctctttcttcattttt |
3141644 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 161 - 593
Target Start/End: Original strand, 2915233 - 2915665
Alignment:
| Q |
161 |
ccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaatt-ttgcatcttggaagaatgatttc |
259 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| | ||||||| |||||| ||||||||||||| ||||| || |
|
|
| T |
2915233 |
ccagctacttgcattgcgagatcatgcattaaatcatgcattttgaaactatgtatattaccatct-ccgtcaattcttgcatcttggaaaaatgacttt |
2915331 |
T |
 |
| Q |
260 |
atcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcgccatccacatttgaatcaact |
359 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||| ||| | | ||| ||| ||| ||||||||||| ||||| |||| |||||| ||| |
|
|
| T |
2915332 |
gtcaagaaattcttcacgaattggttaccagcatcttccatgggctcaatatcaggcaaaccttcgagataaccttgtgccatgcacagctgaatccact |
2915431 |
T |
 |
| Q |
360 |
cgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttggtaactcaattttaggaccgg |
459 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||| | ||||| ||||| |||||||| || ||| ||||| ||| | || |||| ||| || ||||| |
|
|
| T |
2915432 |
catccttctctatttcccaatccttaggatatacggagcaatatgcaaagcattgtctgtgctgaggcgacaagtttcgatagctcagtttcagaaccgg |
2915531 |
T |
 |
| Q |
460 |
caaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcacttttatttcgtaatatgcctcccaat |
559 |
Q |
| |
|
|| ||| ||| | ||| || || ||| |||| || |||||||| ||||||| | ||||||| || |||| ||||||| || | |||| |||||| ||| |
|
|
| T |
2915532 |
catgatgctattttcatcttcgcataatctccataagtcaccttgcaagacattgttccattcactctctttacttttactttgcaataggcctcctaat |
2915631 |
T |
 |
| Q |
560 |
gatctaattgctaatgnaactcctctgcactttt |
593 |
Q |
| |
|
| |||||| |||| || |||||||||||| |||| |
|
|
| T |
2915632 |
gttctaatagctagtggaactcctctgcattttt |
2915665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 446
Target Start/End: Original strand, 3169346 - 3169654
Alignment:
| Q |
138 |
tatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaattt |
237 |
Q |
| |
|
|||||| ||||||||||||| | || ||||||| |||| |||||||| ||||||||||||||||| ||| ||||| |||||| | | ||| ||| |
|
|
| T |
3169346 |
tatccaggtaacaacaatcattaccggctacttccattgcaagatcatgtattaaatcatgcattttgaaactgtgtatatcacca-caactatcagttt |
3169444 |
T |
 |
| Q |
238 |
tg-catcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcag-tgcttttcaattgaacattcaagataacctt |
335 |
Q |
| |
|
| ||||||| || ||||| ||||||||||||||||| || ||||||||||||| |||||| || ||| | |||| | ||||||||||||||||||| |
|
|
| T |
3169445 |
cgacatcttgcaaaaatgacttcatcaagaaaatatttacgaattggttaccaatatcttccat-cagcttttttttagccgaacattcaagataacctt |
3169543 |
T |
 |
| Q |
336 |
gcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaatt |
435 |
Q |
| |
|
| |||||||||| ||||| ||||| | ||| | ||| ||||||||||||||||| |||||| || |||||||||||||| |||| |||||| || |
|
|
| T |
3169544 |
gtgccatccacaaatgaattaactcatgcttatgtattttccaatccttaggatatatagcacagtatgcaaaacattgtctaagttggggtgacaagtt |
3169643 |
T |
 |
| Q |
436 |
ttggtaactca |
446 |
Q |
| |
|
|||||||||| |
|
|
| T |
3169644 |
atggtaactca |
3169654 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 446
Target Start/End: Original strand, 3173019 - 3173222
Alignment:
| Q |
239 |
gcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcg |
338 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||| || | |||| || |||| |||||| |||||||| | |
|
|
| T |
3173019 |
gcatcttggaaaaatgacttcatcaagaaaatatttacaaattg-ttaccaatatcttccataaa---ctttccacctgaaaattcaaagtaaccttgtg |
3173114 |
T |
 |
| Q |
339 |
ccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttg |
438 |
Q |
| |
|
||| ||||| |||||||||||| | |||||| ||| ||||||||| |||||||||| || ||||||||||||||||| ||||| |||||| ||| | |
|
|
| T |
3173115 |
ccacccacagttgaatcaactcatgcttctctattctccaatccttgggatataaagagcagtaagcaaaacattgtcttagttgaggtgacaagtttag |
3173214 |
T |
 |
| Q |
439 |
gtaactca |
446 |
Q |
| |
|
|||||||| |
|
|
| T |
3173215 |
gtaactca |
3173222 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 34 - 639
Target Start/End: Complemental strand, 18356872 - 18356265
Alignment:
| Q |
34 |
aatcaatgttcgcagcctacttgcatccaatgattccaacaacaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatctttttgac |
133 |
Q |
| |
|
|||||| || |||| |||||||| ||||| ||||||||||| | || |||||| |||| ||| |||||||||| |||||||||| | || |||||| | |
|
|
| T |
18356872 |
aatcaaagtccgcaacctacttgaatccagggattccaacaaacacaaggcatcatattccactaatacatgcacgggtcttcctaaacatttttttgcc |
18356773 |
T |
 |
| Q |
134 |
ttatt---atccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagat |
230 |
Q |
| |
|
||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | || ||||||| | || |
|
|
| T |
18356772 |
ttacttgaatccaagtaacaacaatcattgccagctacttgtgttgcaagatcatgcattaaatcatgcattttaaaaccagttacatcaccatgaacat |
18356673 |
T |
 |
| Q |
231 |
tcaattttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagata |
330 |
Q |
| |
|
|||| | |||||||||||||||||| ||| |||||||||| || |||||||| ||||||||||||| ||||| |||||||||| |||||| ||||||| |
|
|
| T |
18356672 |
tcaaatctgcatcttggaagaatgaattcttcaagaaaatttttacaaattgattaccaacatctttcatgcattgcttttcaactgaacaaccaagata |
18356573 |
T |
 |
| Q |
331 |
accttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgac |
430 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||| | ||||||||| |||| |||||| ||||||||||||||||| || |||||| ||| |
|
|
| T |
18356572 |
accttgtgccatccacatttgaattaactcatccttctcaaattcccaatcctgaggaaataaagagcaataagcaaaacattgcctttgttgaggtgat |
18356473 |
T |
 |
| Q |
431 |
aaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttctt |
530 |
Q |
| |
|
|| || ||||||||||||||||||||||||| ||| ||| | | |||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
18356472 |
aagttctggtaactcaattttaggaccggcatgatgctattttcacgatcacacaatttccaaaattctccttgtaagacattgatccattcactttctt |
18356373 |
T |
 |
| Q |
531 |
cacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaattgactcaasantttgat |
630 |
Q |
| |
|
||||| | ||||||||||||||| | ||||||||||||||| | ||||||| ||||||||| |||||||||||||| |||||| |||| | ||| | |
|
|
| T |
18356372 |
tactttcacctcgtaatatgcctcctagtgatctaattgctaacggaactcctttgcacttttctactatcttcttacc-aattgattcaagaggttggt |
18356274 |
T |
 |
| Q |
631 |
tcactccaa |
639 |
Q |
| |
|
||||||||| |
|
|
| T |
18356273 |
tcactccaa |
18356265 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 50 - 609
Target Start/End: Original strand, 10754651 - 10755210
Alignment:
| Q |
50 |
ctacttgcatccaatgattccaaca-acaaaaatgcatcaaattctactgatacatgcacaggtcttcctataaatctttttgacttattatccaagtaa |
148 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||| |||||| || | ||||||||||||| ||||||||||| | |||||||| |||| ||| ||||||| |
|
|
| T |
10754651 |
ctacttgaatccaacgattccaacctacaaaaa-gcatcacataccactgatacatgcagaggtcttcctagacatcttttttccttactattcaagtaa |
10754749 |
T |
 |
| Q |
149 |
caacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaattttgcatcttgga |
248 |
Q |
| |
|
||| ||||| |||||||||||| |||||| |||||||||| ||||||||||||||||||| | || |||||||| |||||||||||||||||||| |
|
|
| T |
10754750 |
caaaaatcattgccagctacttctgttgcaagatcatgcaataaatcatgcattttaaaaccaattacatcaccatcgtcattcaattttgcatcttgga |
10754849 |
T |
 |
| Q |
249 |
agaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcgccatccacat |
348 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| | | |||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
10754850 |
agaatgaattcgtcaagaaaatatttacaaattgattaccaacatcttccatgcatttcccctcaactgaacaaccaagataaccttgtgccatccacat |
10754949 |
T |
 |
| Q |
349 |
ttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttggtaactcaat |
448 |
Q |
| |
|
|||||| ||||| |||||||||| | |||||||||||||| |||||| |||||||||||||||| || |||||| |||||| || |||||||||||| |
|
|
| T |
10754950 |
ttgaattaactcatccttctcaaattcccaatccttaggaaataaagagcaataagcaaaacattccctttgttgaggtgacaagttatggtaactcaat |
10755049 |
T |
 |
| Q |
449 |
tttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcacttttatttcgtaata |
548 |
Q |
| |
|
||||||||||||| ||| ||| | ||| || || ||| |||| || |||||||| ||||||| | ||||||| |||||| ||||||| ||||||||| |
|
|
| T |
10755050 |
tttaggaccggcatgatgctattttcatcttcgcataatctccataagtcaccttgcaagacattgttccattcaatttctttacttttacttcgtaata |
10755149 |
T |
 |
| Q |
549 |
tgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttacc |
609 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
10755150 |
tgcctcccaatgatctaattgccaatggtactcctttgcactttttcgctatcttcttacc |
10755210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 145 - 609
Target Start/End: Complemental strand, 46486 - 46022
Alignment:
| Q |
145 |
gtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgcattttaaaatcttgtatgtcaccatctagattcaatttt-gcatc |
243 |
Q |
| |
|
||||||||||||| |||| |||| ||| |||| |||||||||||||||||||||||||| ||| ||| |||||| | | |||||||| ||||| |
|
|
| T |
46486 |
gtaacaacaatcattgccggctatttgcattgcaagatcatgcattaaatcatgcattttgaaactacatatatcacca-caatcatcaattttagcatc |
46388 |
T |
 |
| Q |
244 |
ttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataaccttgcgccatc |
343 |
Q |
| |
|
|||||||||||| |||||||||||||| || || ||||||||||||| |||||| | || |||| | |||||||||||||||||||||| |||||| |
|
|
| T |
46387 |
ttggaagaatgacttcatcaagaaaatctttacgaattggttaccaatatcttccggaccctgtttttgagttgaacattcaagataaccttgtgccatc |
46288 |
T |
 |
| Q |
344 |
cacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattgtctctgttgaaatgacaaattttggtaac |
443 |
Q |
| |
|
|||| |||||||||||| ||||| | ||| ||||||||||||||||||||| || |||| |||||||||||| ||||| || || |||||||||| |
|
|
| T |
46287 |
cacagttgaatcaactcatccttttttatttcccaatccttaggatataaagagcagtaagaaaaacattgtcttagttgaggcgataagttttggtaac |
46188 |
T |
 |
| Q |
444 |
tcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcgatccattccctttcttcacttttatttcg |
543 |
Q |
| |
|
||| ||| | || |||| ||||| || | || ||||| ||||||||||| ||| ||||||| ||| | | ||||||| |||||||||||||| | | |
|
|
| T |
46187 |
tcagtttcaacactggcatgatggtttcttcgtcttcacataatttccaaaagtcatcttgtaaaacaccaacccattccgtttcttcacttttaccttg |
46088 |
T |
 |
| Q |
544 |
taatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttacc |
609 |
Q |
| |
|
||| | |||||| |||| ||| ||||||| || ||| || |||||||||| ||||||||||||| |
|
|
| T |
46087 |
taaaaggcctcctaatgttctgattgctagtggaacaccactgcacttttcagctatcttcttacc |
46022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 315 - 636
Target Start/End: Original strand, 3918408 - 3918728
Alignment:
| Q |
315 |
ttgaacattcaagataaccttgcgccatccacatttgaatcaactcgtccttctcaattacccaatccttaggatataaagcacaataagcaaaacattg |
414 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||| ||||| || |||||||| || ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3918408 |
ttgaacattcaagataaccatgtgccatccacaattgtatcaattcatccttctctatatcccaatccttaggatataaagagcaataagcaaaacattg |
3918507 |
T |
 |
| Q |
415 |
tctctgttgaaatgacaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcaccttgtaagacatcg |
514 |
Q |
| |
|
|| | ||||| ||||| ||||||||||||| ||| | || |||| || | || | ||| ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
3918508 |
tcgcagttgaggcgacaagttttggtaactcagtttcaacactggcatgatactttcttcatcttcacataatttccaaaagtcaccttgtaaaacatca |
3918607 |
T |
 |
| Q |
515 |
atccattccctttcttcacttttatttcgtaatatgcctcccaatgatctaattgctaatgnaactcctctgcactttttcactatcttcttaccnaatt |
614 |
Q |
| |
|
|||||||| | ||||||||||||| | |||| | |||||| | || ||| ||||||| || ||| || ||||||||| |||||||||| || ||| |
|
|
| T |
3918608 |
atccattcacattcttcacttttaccttgtaacaggcctcctagtgttcttattgctagtggaaccccagtgcacttttctgctatcttcttgccg-att |
3918706 |
T |
 |
| Q |
615 |
gactcaasantttgattcactc |
636 |
Q |
| |
|
|| |||| | |||| ||||||| |
|
|
| T |
3918707 |
gattcaagagtttggttcactc |
3918728 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 538
Target Start/End: Complemental strand, 7157421 - 7157284
Alignment:
| Q |
401 |
taagcaaaacattgtctctgttgaaatgacaaattttggtaactcaattttaggaccggcaaaatggtatcgttatcctcacacaatttccaaaattcac |
500 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |||||||||||| ||| | || |||| |||| |||| | || ||||| ||||||||||| |||| |
|
|
| T |
7157421 |
taagcaaaacattgtctcatttgaggagacaagctttggtaactcagtttcaacactggcataatgctatcttcgtcttcacataatttccaaaagtcac |
7157322 |
T |
 |
| Q |
501 |
cttgtaagacatcgatccattccctttcttcactttta |
538 |
Q |
| |
|
||||||| ||||| ||||||||| | |||||||||||| |
|
|
| T |
7157321 |
cttgtaaaacatccatccattccttctcttcactttta |
7157284 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 3918353 - 3918402
Alignment:
| Q |
239 |
gcatcttggaagaatgatttcatcaagaaaatattcacaaattggttacc |
288 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
3918353 |
gcatcttgaaaaaatgacttcatcaacaaaatattcacgaattggttacc |
3918402 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 7160381 - 7160256
Alignment:
| Q |
235 |
ttttgcatcttggaagaatgatttcatcaagaaaatattcacaaattggttaccaacatcttctatgcagtgcttttcaattgaacattcaagataacct |
334 |
Q |
| |
|
||||||||||||||| | ||| ||| | ||||||| || || ||||| ||||| | |||||| ||| || |||||| |||||| |||||||| || |
|
|
| T |
7160381 |
ttttgcatcttggaaaagtgacttcttgaagaaaaggtttacgaattgattaccgatatcttccatgagctgtttttcagctgaacagtcaagatagtct |
7160282 |
T |
 |
| Q |
335 |
tgcgccatccacatttgaatcaactc |
360 |
Q |
| |
|
|| |||||||||| |||||||||||| |
|
|
| T |
7160281 |
tgtgccatccacagttgaatcaactc |
7160256 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 7160516 - 7160412
Alignment:
| Q |
100 |
tacatgcacaggtcttcctataaatctttttgacttattatccaagtaacaacaatcagtgccagctacttgtgttgcgagatcatgcattaaatcatgc |
199 |
Q |
| |
|
||||||||| || ||||||| || |||| ||| || | |||||||||||| |||||| |||| |||||||| |||| || ||||| |||||||| || |
|
|
| T |
7160516 |
tacatgcacgggacttcctacaagtcttgttgtctcactatccaagtaacggcaatcaatgccggctacttgcattgcaaggtcatgtattaaatcgtgt |
7160417 |
T |
 |
| Q |
200 |
atttt |
204 |
Q |
| |
|
||||| |
|
|
| T |
7160416 |
atttt |
7160412 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University