View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240-INSERTION-3 (Length: 551)
Name: NF1240-INSERTION-3
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-3 |
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Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 44815751 - 44816292
Alignment:
| Q |
8 |
aataccatattagaaagcctagtttagaaaatgagaattgccttataaactcatctaaattattgttatcaaattttcatgt--------------gtaa |
93 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44815751 |
aataccatattagaaagcctagtttggaaaatgagaattgccttataaactcatctaaattattgttatcaaattttcatgtaaaaatattcgtgtgtaa |
44815850 |
T |
|
| Q |
94 |
cataataatactagtttactaagatatactcaaacacacaacacgaacacaagtaatttattaaactggttgagtaaa-cgatacacatgcatcatgtac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44815851 |
cataataatactagtttactaagatatactcaaacacacaacacgaacacaagtaatttattaaactggttgagtaaaacgatacacatgcatcatgtaa |
44815950 |
T |
|
| Q |
193 |
aaaacaacacaaatacttgcaatcttaagtaataaacgatnnnnnnnnnnnnntcatgtaaacaataataaataaaaactagttatttatgatggtgtgt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44815951 |
aaaacaacacaaatacttgcaatcttaagtaataaacgatacacacaca----tgatgtaaacaataataaataaaaactagttatttatgatggtgtgt |
44816046 |
T |
|
| Q |
293 |
tccaggaagcttatcctttatcttgtcaattattcctttcttgttgtgatggttgtttgtcttgttcccatcaacaaaaacaccgtcgtctgtggtggta |
392 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44816047 |
tccaggaagcttctcctttatcttgtcaattattcctttcttgttgtgatggttgtttgtcttgttcccatcaacaaaaacaccgtcgtctgtggtggta |
44816146 |
T |
|
| Q |
393 |
gtgtcaactgcggtggttgtatctgccatggcttgtgtgcttccgccaccatcaacattaacgccggtagtatcaagttccctatgaattagatcattgt |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44816147 |
gtgtcaactgcggtggttgtatctgccatggcttgtgtgcttccgccaccatcaac---aacgccggtagtatcaagttccctatgaattagatcattgt |
44816243 |
T |
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| Q |
493 |
tgcttataggaacagcaccgtactggttttgaaagttatccagtataat |
541 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
44816244 |
tgcttataggaacagcaccgtactggttttgaaaattatccattataat |
44816292 |
T |
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