View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240-INSERTION-4 (Length: 341)
Name: NF1240-INSERTION-4
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-4 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 39500428 - 39500751
Alignment:
| Q |
8 |
agaaactgagaggagcaagatcattacatttacatgttccttgcacatcattgtttagaccatccaagcaaagcaagaattatctgaaaaatattgccac |
107 |
Q |
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| T |
39500428 |
agaaactgagaggagcaagatcattacatttacatgttccttgcacatcatcgtttagaccatccaagcaaagcaagaattatctgaaaaatattgccac |
39500527 |
T |
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| Q |
108 |
caaaaatagccctcaaaatattttccttctcaggtgtatatgggggataccttatggatggatcggaatcaaaagttctatataaaactgatttcttatg |
207 |
Q |
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| T |
39500528 |
caaaaatagccctcaaaatattttccttctcaggtgtatatgggggataccttatggatggatcggaatcaaaagttttatataaaactgatttcttatg |
39500627 |
T |
|
| Q |
208 |
gctgtaactatcaaaagagaactttccatggtagcagcccattccactttctccaactcctccaaaaggcaaaccacgagttgcaacctgcaccaacatt |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39500628 |
gctgaaactatcaaaagagaactttccatggtagcagcccattccactttctccaactcctccaaaaggcaaaccacgagttgcaacctgcaccaacatt |
39500727 |
T |
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| Q |
308 |
gttgtacaaacaagtcagtataat |
331 |
Q |
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|||||||||||||||||||||||| |
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| T |
39500728 |
gttgtacaaacaagtcagtataat |
39500751 |
T |
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