View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240-INSERTION-5 (Length: 624)
Name: NF1240-INSERTION-5
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-5 |
 | |
|
| [»] chr6 (13 HSPs) |
| |
|
| [»] scaffold0264 (1 HSPs) |
| |
|
| [»] scaffold0074 (1 HSPs) |
| |
|
| [»] scaffold0007 (1 HSPs) |
| |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 228 - 507
Target Start/End: Complemental strand, 732387 - 732108
Alignment:
| Q |
228 |
ctgcttgcatcatcgtgtcgagtttattaggatatagaatcgtacaaacaaaacgaagacgctattgttctatcgttcatatatgggatagggttttaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
732387 |
ctgcttgcatcatcgtgtcgagtttattagaatatagaatcgtacaaacaaaacgaagacgctattgttctatcgttcgtatatgggatagggttttaaa |
732288 |
T |
|
| Q |
328 |
ggaaaatgcgatttggtgcgagagaaaaatattccgcggatgacttggcaagtacaaaatattcggctctatcaccttgaccccacaaaacattaacnnn |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
732287 |
ggaaaatgcgatttggtgcgagagaaaaatattccgtgaatgacttggcaagttcaaaatattcggctctatcaccttgaccccacaaaacattaacttt |
732188 |
T |
|
| Q |
428 |
nnnnnnnnnnnnnnnnnnnnngggcaaacccacaaaacattaactaagtaactactactccctctctccttatagtataa |
507 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
732187 |
ttactactattttttatttttgtgcaaacccacaaaacattaactaagtaactactactccctctctccttatagtataa |
732108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 58 - 227
Target Start/End: Complemental strand, 732629 - 732460
Alignment:
| Q |
58 |
aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
732629 |
aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact |
732530 |
T |
|
| Q |
158 |
ctgtatgtatcacggtttcaaacctatcattgagcaaggaaactgaacaatcatagaatggacaattcac |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
732529 |
atgtacgtatcacggtttcaaacctatcattgagcaacgaaactgaacaatcatagaatggacaattcac |
732460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 22001558 - 22001455
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22001558 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaggctagaccttcaatcttgacaattgcttct |
22001459 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
22001458 |
tatc |
22001455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 22085617 - 22085514
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22085617 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaggctagaccttcaatcttgacaattgcttct |
22085518 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
22085517 |
tatc |
22085514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 21967288 - 21967185
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21967288 |
agatttttctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgatccagaggctagaccttcaatcttgacaattgcttct |
21967189 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
21967188 |
tatc |
21967185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 21967734 - 21967631
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21967734 |
agatttttctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgatccagaggctagaccttcaatcttgacaattgcttct |
21967635 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
21967634 |
tatc |
21967631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 18990551 - 18990448
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||| |||||||| |
|
|
| T |
18990551 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccggatgctagaccttcgatcgtgacagttgcttct |
18990452 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
18990451 |
tatc |
18990448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 521 - 622
Target Start/End: Complemental strand, 20235466 - 20235365
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| || ||||| |
|
|
| T |
20235466 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
20235367 |
T |
|
| Q |
621 |
ta |
622 |
Q |
| |
|
|| |
|
|
| T |
20235366 |
ta |
20235365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 521 - 622
Target Start/End: Complemental strand, 22129450 - 22129349
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| || ||||| |
|
|
| T |
22129450 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
22129351 |
T |
|
| Q |
621 |
ta |
622 |
Q |
| |
|
|| |
|
|
| T |
22129350 |
ta |
22129349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 20083495 - 20083392
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| ||| ||||| |||||||| |
|
|
| T |
20083495 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgccagaccttcgatcgtgacagttgcttct |
20083396 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
20083395 |
tatc |
20083392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 521 - 624
Target Start/End: Original strand, 22209684 - 22209787
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |||||||| |
|
|
| T |
22209684 |
agattattctacaaatgaagtaattaagtacattcagattggtctattatgtgttcaaaatgacccggatgctagaccttcaattgcgacagttgcttct |
22209783 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
22209784 |
tatc |
22209787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 18995141 - 18995038
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
|||||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
18995141 |
agattattctgcaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
18995042 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
18995041 |
tatc |
18995038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 18979194 - 18979097
Alignment:
| Q |
526 |
attctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttcttatc |
624 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||||||| ||||||||||| ||||||||| || | ||||||||| || ||||| || ||||||||| |
|
|
| T |
18979194 |
attctacaaatgaagtcattaagtgcatttagattggtcgattatgtgttcgaaatgacccggatg-tagaccttcgattgtgacagttccttcttatc |
18979097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 577
Target Start/End: Original strand, 20233809 - 20233861
Alignment:
| Q |
525 |
tattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttca |
577 |
Q |
| |
|
|||||| ||| |||||| ||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
20233809 |
tattctgaaattgaagtaattaaatgcattcagattggtttattatgcgttca |
20233861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 525 - 577
Target Start/End: Original strand, 22127793 - 22127845
Alignment:
| Q |
525 |
tattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttca |
577 |
Q |
| |
|
|||||| ||| |||||| ||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
22127793 |
tattctgaaattgaagtaattaaatgcattcagattggtttattatgcgttca |
22127845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 521 - 624
Target Start/End: Complemental strand, 14976 - 14873
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
14976 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
14877 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
14876 |
tatc |
14873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 521 - 624
Target Start/End: Original strand, 50318 - 50421
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
50318 |
agattattctacaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
50417 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
50418 |
tatc |
50421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 521 - 624
Target Start/End: Original strand, 7852 - 7955
Alignment:
| Q |
521 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaagctagaccttcaatcttgacaattgcttct |
620 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
7852 |
agattattctacaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
7951 |
T |
|
| Q |
621 |
tatc |
624 |
Q |
| |
|
|||| |
|
|
| T |
7952 |
tatc |
7955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 321 - 424
Target Start/End: Original strand, 8392957 - 8393068
Alignment:
| Q |
321 |
ttttaaaggaaaatgcgatttggtgcgagagaaaaat--------attccgcggatgacttggcaagtacaaaatattcggctctatcaccttgacccca |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| ||| |||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
8392957 |
ttttaaaggaaaatgctttttggtgcgagagaaaaattcgtcggaattgagcgaatgacttgacaagttcaaaatattcggctctatcaccttgatccca |
8393056 |
T |
|
| Q |
413 |
caaaacattaac |
424 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8393057 |
caaaacattaac |
8393068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Complemental strand, 15578381 - 15578324
Alignment:
| Q |
367 |
atgacttggcaagtacaaaatattcggctctatcaccttgaccccacaaaacattaac |
424 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15578381 |
atgacttagcaagttcaaaatattcggctctatcaccttgaccccacaaaacattaac |
15578324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 367 - 424
Target Start/End: Original strand, 36846558 - 36846615
Alignment:
| Q |
367 |
atgacttggcaagtacaaaatattcggctctatcaccttgaccccacaaaacattaac |
424 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36846558 |
atgacttggcaagttcaaaatattcggctctatcaccttgatcccacaaaacattaac |
36846615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 424
Target Start/End: Complemental strand, 44462933 - 44462826
Alignment:
| Q |
325 |
aaaggaaaatgcgatttggtgcgagagaaaaat--------attccgcggatgacttggcaagtacaaaatattcggctctatcaccttgaccccacaaa |
416 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| ||| |||| ||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
44462933 |
aaaggaaaatgctttttggtgcgagagaaaaattcgtcggaattgagcgaatgatttggcaagttcaaaatattcggctctatcaccttgatcccacaaa |
44462834 |
T |
|
| Q |
417 |
acattaac |
424 |
Q |
| |
|
|||||||| |
|
|
| T |
44462833 |
acattaac |
44462826 |
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