View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240-INSERTION-6 (Length: 573)
Name: NF1240-INSERTION-6
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 226 - 573
Target Start/End: Complemental strand, 32063525 - 32063177
Alignment:
| Q |
226 |
atatgtttaaacgtttcataggataatttttaaataactaaacaataaatagtagagattttttactggacttnnnnnnnn-gtctaattcatcgcggtc |
324 |
Q |
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| T |
32063525 |
atatgtttaaacgtttgataggataatttttaaatagctaaacgataaatagtagagattttttactggacttaaaaaaaatgtctaattcatcgcggtc |
32063426 |
T |
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| Q |
325 |
tatttaaaaacatacatttcaacaataatttgtttggatgtgaattaattattttctttgcgtagctttaaagatcaatctctctagtagaatagaatca |
424 |
Q |
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| T |
32063425 |
tatttaaaaacatacatttcaacaataatttgtttggatgtgaactaattattttctttgcataactttaaagactaatctctctaatagaatagaacca |
32063326 |
T |
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| Q |
425 |
gatgacaaaacctttcatcaagagatttaacattgttgcatgcttaagattaaattcaaactcatgacctatgattaagctgaaaaagatcatttatcat |
524 |
Q |
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| T |
32063325 |
aatgacaaaacatttcatcaagagatttaacattgttgcattcttaagattaaattcaaactcacgacctatgattaagttgaaagagatcatttatcat |
32063226 |
T |
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| Q |
525 |
caccgagtgttcttcggtcaattcatcgataattattttttagtaacac |
573 |
Q |
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| T |
32063225 |
caccgagtgttcttcggtcaattcatcgataattattttttagtaacac |
32063177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 32064127 - 32063925
Alignment:
| Q |
8 |
catatgtgtagtttttgttttctctaattctttagtagaatcannnnnnnnn-ccttcgtagatataatattctatatccgcatattcaatgcttctgtt |
106 |
Q |
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| T |
32064127 |
catatgtgtagtttttgttttctctaattctatagtagaatcattttttttttccttcgtagatataatattctatatccgcatattcaatgcttctgtt |
32064028 |
T |
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| Q |
107 |
tgtagataggactgtgcaaaaactattttactccatagttgatatgtatccacacagacgcacttagtccatcatgggtcgcttagattcatcgagagtg |
206 |
Q |
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| T |
32064027 |
tgtagataggactgagcaaaaactacgttactccatagttgatatgtatccacacagacgcacttagtccatcatgggtcgcttagattcatcgagagtg |
32063928 |
T |
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| Q |
207 |
ggt |
209 |
Q |
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| T |
32063927 |
ggt |
32063925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 525
Target Start/End: Original strand, 2418025 - 2418074
Alignment:
| Q |
476 |
aaattcaaactcatgacctatgattaagctgaaaaagatcatttatcatc |
525 |
Q |
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| T |
2418025 |
aaattcaaactcaagatctatgattaagttgaaagagatcttttatcatc |
2418074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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