View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240-INSERTION-9 (Length: 369)
Name: NF1240-INSERTION-9
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240-INSERTION-9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 8 - 369
Target Start/End: Complemental strand, 595724 - 595364
Alignment:
| Q |
8 |
cactctgcgaaaaggaaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattct |
107 |
Q |
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| T |
595724 |
cactctgcgaaaaggaaatggcatacctttaattcaattgaatattcataatcacattatcaatagacgtagaaactaaagtagacgactcttgaattct |
595625 |
T |
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| Q |
108 |
cactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgagcaata |
207 |
Q |
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| T |
595624 |
cactgctctgtcaacaaactaaaatcaagcaaagcaatcaagacagtaatccatttttgctatgattggtaaaatagtactaaaattagtttgaacaata |
595525 |
T |
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| Q |
208 |
acaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctcatgctatgtggaaattg |
307 |
Q |
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| T |
595524 |
acaaagcctatgtattattccccttgtcctgttatgtactaaatttgcatccttcttttttatttgtttctgtttctctgctcatgctatgtggacattg |
595425 |
T |
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| Q |
308 |
gtttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctag |
369 |
Q |
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| T |
595424 |
g-ttttatgtggctgattgtcatcaatgttactcgacattcctatcataaataccgagctag |
595364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 4590129 - 4590038
Alignment:
| Q |
89 |
tagacgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaa |
180 |
Q |
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| T |
4590129 |
tagacgactctcgaattctccctggtctgtcaacaaactaaaaacaagtaaagcattcaggacaggaatttatttctgctatgattggtaaa |
4590038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 312
Target Start/End: Complemental strand, 4589904 - 4589841
Alignment:
| Q |
249 |
aatttgcatccttcttttttatttgtttctgtttctctgctcatgctatgtggaaattggtttt |
312 |
Q |
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| T |
4589904 |
aatttgcatccttcccttttatttgtttcagtttctctgcacatgcaatgtggccattggtttt |
4589841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 4603770 - 4603679
Alignment:
| Q |
92 |
acgactcttgaattctcactgctctgtcaacaaactaaaatcaagcaaagcattcaagacagtaatccatttttgctatgattggtaaaata |
183 |
Q |
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| T |
4603770 |
acgattctcgaattctcactgacctgtcgacaaattaaaaacaagtaaagcattcaggatagtaatttaattctgctatgattggtaaaata |
4603679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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