View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12400_low_1 (Length: 596)
Name: NF12400_low_1
Description: NF12400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12400_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 40724382 - 40723818
Alignment:
| Q |
1 |
tgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaa |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |||| || |
|
|
| T |
40724382 |
tgggtggttttaggaagcaaatggcacagatccgtgagttggtcgagcttccac------------aactttttaagtcaattggtgtgaaaccacccaa |
40724295 |
T |
|
| Q |
101 |
aggaattttgctttctggaccaccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggacca |
200 |
Q |
| |
|
||||||||| || | |||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40724294 |
aggaatttttctatatggacccccaggttctggaaagacattaatagcaagagctgttgctaatgaaactggagctttcttcttttgtattaatggacca |
40724195 |
T |
|
| Q |
201 |
gagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaa |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40724194 |
gagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaa |
40724095 |
T |
|
| Q |
301 |
ttgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40724094 |
ttgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgc |
40723995 |
T |
|
| Q |
401 |
tcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttcca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40723994 |
tcatgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttcca |
40723895 |
T |
|
| Q |
501 |
gatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaagttgggcatt |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
40723894 |
gatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctcatgatgtaagttggacatt |
40723818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 40665672 - 40666066
Alignment:
| Q |
1 |
tgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40665672 |
tgggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccacttaggcatccacaactttttaagtcaattggtgcgaaagcacctaa |
40665771 |
T |
|
| Q |
101 |
aggaattttgctttctggaccaccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggacca |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40665772 |
aggaattttgctttctggacccccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggacca |
40665871 |
T |
|
| Q |
201 |
gagattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatcttta-ttgatgaa |
299 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40665872 |
gagattatgtccaaactggctggagagagtgaaagcaatcttaggaaagcgtttgaagaagcagaaaagaatgcaccatccatcatctttatttgatgaa |
40665971 |
T |
|
| Q |
300 |
attgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatc |
394 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
40665972 |
attgattctattgcacccaagcgggagaagacaaacggtgaagttgaaagaaggattgtctcacaacttctgactcttatggatgggctagaatc |
40666066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 450 - 577
Target Start/End: Original strand, 40666102 - 40666229
Alignment:
| Q |
450 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40666102 |
gcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaattgggcgacttgaagtccttcgcatacataccaaaaacatga |
40666201 |
T |
|
| Q |
550 |
agctctctgatgatgtaagttgggcatt |
577 |
Q |
| |
|
|||||||| |||||||||||||| |||| |
|
|
| T |
40666202 |
agctctctcatgatgtaagttggacatt |
40666229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 3 - 553
Target Start/End: Original strand, 27977085 - 27977635
Alignment:
| Q |
3 |
ggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaag |
102 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || |||| || || ||| |||||||||||||| | || ||||| ||||||||||| |||| |||| |
|
|
| T |
27977085 |
ggtggtgttagaaagcagatggctcagattcgggaactggtggaactgccattgaggcatccacaattattcaagtctattggtgtgaagccaccaaaag |
27977184 |
T |
|
| Q |
103 |
gaattttgctttctggaccaccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccaga |
202 |
Q |
| |
|
| |||||| | | |||||| || || | || ||||| ||||| ||| ||||| |||| ||||||||||| |||||||| || ||||| ||||| || || |
|
|
| T |
27977185 |
ggattttgttgtatggaccccctggatctggtaagactttaattgcacgagctgttgcaaatgaaactggtgctttctttttctgtatcaatggtcctga |
27977284 |
T |
|
| Q |
203 |
gattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaatt |
302 |
Q |
| |
|
||| ||||| || ||||||| ||||||||||| ||||| ||||| ||||| |||||||| || ||||||||||| || |||||||| |||||||| || |
|
|
| T |
27977285 |
gatcatgtcaaagctggctggtgagagtgaaagtaatctgaggaaggcattcgaagaagctgagaagaatgcaccctcaatcatcttcattgatgagata |
27977384 |
T |
|
| Q |
303 |
gattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctc |
402 |
Q |
| |
|
|| || ||||| || ||| |||| ||||| ||||||||||| || |||| |||||||| || || |||| || ||||||||||| ||||||||||| | |
|
|
| T |
27977385 |
gactccattgctccaaagagggagaagactaatggtgaagttgagcgaagaattgtttcccagctcttgaccctcatggatgggcttaaatcccgtgcac |
27977484 |
T |
|
| Q |
403 |
atgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccaga |
502 |
Q |
| |
|
|||| ||||| ||||| || || ||||| ||||||||||| ||||| || | | |||||||| || |||||| |||| || ||||||||||| ||||| |
|
|
| T |
27977485 |
atgtaattgttatgggagcaacaaatcgtcccaatagcatcgaccctgctcttcggaggtttggaaggtttgatcgggagattgatattggtgtaccaga |
27977584 |
T |
|
| Q |
503 |
tgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagct |
553 |
Q |
| |
|
|||| |||| || ||||| || || ||||| ||||| ||||| |||||||| |
|
|
| T |
27977585 |
tgaagttggacgtcttgaggttctccgcatccatacaaaaaatatgaagct |
27977635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 3 - 567
Target Start/End: Complemental strand, 41093219 - 41092655
Alignment:
| Q |
3 |
ggtggtgttaggaagcaaatggcacagattcgcgagttggtcgagcttccactgaggcatccacaactttttaagtcaattggtgtgaaagcacctaaag |
102 |
Q |
| |
|
|||||||| || ||||| |||||||||||| | || |||| || | ||||||||||| |||||| | || ||||| |||||||| || |||| || | |
|
|
| T |
41093219 |
ggtggtgtgagaaagcagatggcacagattagggaactggttgaattgccactgaggcacccacaattattcaagtctattggtgtcaagccaccaaagg |
41093120 |
T |
|
| Q |
103 |
gaattttgctttctggaccaccaggtaccggaaagacattaatagcaagagctattgctaatgaaactggagctttcttcttttgtattaatggaccaga |
202 |
Q |
| |
|
| ||| | | | |||||| || ||| | |||||||| ||||| || | || |||| |||||||| || || ||||| || || |||||||| || || |
|
|
| T |
41093119 |
ggattctcttgtatggaccccctggttctggaaagactttaattgctcgggcagttgcaaatgaaacaggtgccttctttttctgcattaatggccctga |
41093020 |
T |
|
| Q |
203 |
gattatgtccaaaatggctggagagagtgaaagcaatcttaggaaagcatttgaagaagcagaaaagaatgcaccatccatcatctttattgatgaaatt |
302 |
Q |
| |
|
||| ||||| ||| | ||||| ||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
41093019 |
gataatgtcgaaacttgctggtgagagtgaaagcaatctaaggaaggcatttgaggaagctgagaagaatgcaccttccatcatctttattgatgagata |
41092920 |
T |
|
| Q |
303 |
gattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgactcttatggatgggctaaaatcccgtgctc |
402 |
Q |
| |
|
||||| || || || ||||| || || || | ||||||||||| || |||||||| || ||||| |||| ||||||||||| || ||||| ||||| | |
|
|
| T |
41092919 |
gattccatagctcctaagcgagagaaaactcacggtgaagtagagaggaggattgtctcccaactcttgacccttatggatggtcttaaatcacgtgcac |
41092820 |
T |
|
| Q |
403 |
atgttattgtcatgggggccactaatcgccccaatagcattgacccggcattgagaaggtttggtagatttgatagggaaatcgatattggtgttccaga |
502 |
Q |
| |
|
|||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||| | || |||||||| || ||||||||||| || ||||||||||||||||| |
|
|
| T |
41092819 |
atgtaattgttatgggagccacaaataggcccaatagcattgaccctgcacttaggaggtttggaaggtttgatagggagattgatattggtgttccaga |
41092720 |
T |
|
| Q |
503 |
tgaaattgggcgacttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgtaa |
567 |
Q |
| |
|
|| ||||||| ||||| || ||||| || ||||| || || ||||| ||| | || ||||||| |
|
|
| T |
41092719 |
cgaggttgggcgtcttgaggttcttcgaattcatacaaagaatatgaaactcgccgaagatgtaa |
41092655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 15690253 - 15690360
Alignment:
| Q |
274 |
caccatccatcatctttattgatgaaattgattctattgcacccaagcgggacaagacaaatggtgaagtagaaagaaggattgtttcacaacttctgac |
373 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||||| || |||||| | || |||||| || |||||| || |||||||||||||||||| | ||| |
|
|
| T |
15690253 |
caccattcatcttctttattgatgaatttgattctactgtacccaa--gagagaagacacgtgatgaagttgatagaaggattgtttcacaagtcttgaa |
15690350 |
T |
|
| Q |
374 |
tcttatggat |
383 |
Q |
| |
|
|||||||||| |
|
|
| T |
15690351 |
tcttatggat |
15690360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University