View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12400_low_2 (Length: 429)
Name: NF12400_low_2
Description: NF12400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12400_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 5351208 - 5351625
Alignment:
| Q |
1 |
ggtctcatccgttctggttggttcctacttcttacatccattctggttgaatgagatcagtgtgcgtcagtttcatcgttagttgnnnnnnnnnnnggaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||| |||||||| |||| |
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| T |
5351208 |
ggtctcatccgttctggttggttcctacttcttacattcattctagttgaatgagaccactgtgcgtc---------gttagttgtttttttttttggaa |
5351298 |
T |
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| Q |
101 |
aaactgtttaacgacgaaactgtg-cactggtctcattaaacaatatttttatttcttttaatttacattgttttagtcaatcaatctattaatttgttt |
199 |
Q |
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||| || |||||||||||||| || || ||||||| ||| | ||||||||||||||||||||| |||||||||||| || | ||||||||||||| |
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| T |
5351299 |
aaaaagtctaacgacgaaactgacacattgatctcattcaacgaaatttttatttcttttaatttatattgttttagtcgattgttatattaatttgttt |
5351398 |
T |
|
| Q |
200 |
aacgtgcattgattaattggttttgctaatttgattttgattattatcgacgagggtagcgattgagctgagcaaaaatgtggttgagggtgttgatatt |
299 |
Q |
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| T |
5351399 |
a-cgtgcattgatgaatttgtttttctaatttgattttgattataatcgacgagggtagcgattgagctgagcaaaaatgtggttgagggtgttgatatt |
5351497 |
T |
|
| Q |
300 |
gagtacattgatatttcaaatctacaaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgtcaaaagattcttg |
399 |
Q |
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| T |
5351498 |
gagtacattgatatttcaactttaccaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgtcaaaagattcttg |
5351597 |
T |
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| Q |
400 |
ctgctgatagtgttctctctgcttctcc |
427 |
Q |
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| T |
5351598 |
ctgctgatagtgttctctttgcttctcc |
5351625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 253 - 427
Target Start/End: Complemental strand, 5325669 - 5325495
Alignment:
| Q |
253 |
gggtagcgattgagctgagcaaaaatgtggttgagggtgttgatattgagtacattgatatttcaaatctacaaatgttgaacactgatctagagataga |
352 |
Q |
| |
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||||||| |||||||| ||||||| ||| |||| ||| | | || |||||||||||| ||||||| | | |||||||||||||||||| |||| ||| |
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| T |
5325669 |
gggtagctattgagctaagcaaaagtgttattgatggtatccaaatcgagtacattgatctttcaaacttgccaatgttgaacactgatcttgagaaaga |
5325570 |
T |
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| Q |
353 |
agggaattttccagctgaagttgaagcttttcgtcaaaagattcttgctgctgatagtgttctctctgcttctcc |
427 |
Q |
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||| | |||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
5325569 |
aggaacttttcctgctgaagttgaagcatttcgtcataagattcttgaagctgatagtgttctctttgcttctcc |
5325495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 427
Target Start/End: Original strand, 5343670 - 5343840
Alignment:
| Q |
254 |
ggtagcgattgagctgagcaaaaatgtggttgagggtgttgatattgagtacattgatatttcaaatctacaaatgttgaacactgatctagagatagaa |
353 |
Q |
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|||||| |||||| ||||||||||||||| |||||||| ||||||| || || ||||||||||||||| | |||||||||||||||| |||| |||| |
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| T |
5343670 |
ggtagctattgagttgagcaaaaatgtgg---agggtgttcatattgaatatgttaatatttcaaatctaccattgttgaacactgatcttgagaaagaa |
5343766 |
T |
|
| Q |
354 |
gggaattttccagctgaagttgaagcttttcgtcaaaagattcttgctgctgatagtgttctctctgcttctcc |
427 |
Q |
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|||| || ||||| |||||||||| | ||||| |||||||||||| |||||||| |||||| ||||||||| |
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| T |
5343767 |
gggacttatccagttgaagttgaatcctttcggaaaaagattcttggagctgatagctttctctttgcttctcc |
5343840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 427
Target Start/End: Complemental strand, 5339564 - 5339439
Alignment:
| Q |
302 |
gtacattgatatttcaaatctacaaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgtcaaaagattcttgct |
401 |
Q |
| |
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|||| |||||||||| ||| | | | |||||||||||||||| ||| |||||||| |||||| ||||||||||| ||||||| | | ||||||| |
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| T |
5339564 |
gtacgttgatatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaagattttcgtgattatattcttgga |
5339465 |
T |
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| Q |
402 |
gctgatagtgttctctctgcttctcc |
427 |
Q |
| |
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|||||||| |||| | ||||||||| |
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| T |
5339464 |
gctgatagctttctatttgcttctcc |
5339439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5343546 - 5343579
Alignment:
| Q |
1 |
ggtctcatccgttctggttggttcctacttctta |
34 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
5343546 |
ggtctcatccgttctggttagttcctacttctta |
5343579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 427
Target Start/End: Complemental strand, 14536810 - 14536675
Alignment:
| Q |
292 |
ttgatattgagtacattgatatttcaaatctacaaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgtcaaaa |
391 |
Q |
| |
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|||| ||||||| |||||||||||||| ||||| |||| ||||||||||| |||| ||||| | || |||| || |||||||||||||| || || |
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| T |
14536810 |
ttgagattgagttcattgatatttcaactctacctatgtataacactgatcttgagaatgaaggaacttatccacctcttgttgaagcttttcgccacaa |
14536711 |
T |
|
| Q |
392 |
gattcttgctgctgatagtgttctctctgcttctcc |
427 |
Q |
| |
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||||||| |||||||||||||| | ||||||||| |
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| T |
14536710 |
gattcttcaagctgatagtgttctttttgcttctcc |
14536675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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