View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12400_low_3 (Length: 297)
Name: NF12400_low_3
Description: NF12400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12400_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 11044231 - 11044504
Alignment:
| Q |
7 |
gaacctgtgtagcatttgctagttcctcgggagtggaatcaccagcctggaagtaaaaaatagggccataagaaattaagaataatgcacaaccttttct |
106 |
Q |
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| T |
11044231 |
gaacctgtgtagcatttgctagttcctcgggagtggaatcaccagcctggaaataaaaaatagggccataagaaattaagaataatgcacaaccttttct |
11044330 |
T |
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| Q |
107 |
ttttcaaatttatcagcaatgatgttacgaaaattaagaaaaaggccatatattaaaagcataccttgaccttgcgtgcacgacgtgggaagacaaccaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11044331 |
ttttcaaatttatcagcaatgatggtacgaaaattaagaaaaaggccatatattaaaagcataccttgaccttgcgtgcacgacgtgggaagacaaccaa |
11044430 |
T |
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| Q |
207 |
cttggccttgtatgtcttcagcctctggacgttggcttgcagaccttccaacgatcggttcttgcggcgatgat |
280 |
Q |
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| T |
11044431 |
cttggccttgtatgtcttcagcctctggacgttggcttgcagaccttccaacgatcggttcttgcggcgatgat |
11044504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 280
Target Start/End: Complemental strand, 45810817 - 45810526
Alignment:
| Q |
7 |
gaacctgtgtagcatttgctagttcctcgggagtggaatcaccagcctggaagtaaaaaatagggccataagaaattaagaataatgcacaaccttttct |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||| |
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| T |
45810817 |
gaacctgtgtagcatttgctagttcctcaggagtggaatcaccagcctggaaataaaaaacagggccgtaagaaattaagaataatgcacaactttttct |
45810718 |
T |
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| Q |
107 |
ttttcaaatttatcagcaatgatgttacgaaaattaagaaaaaggccatatattaaaagca------------------taccttgaccttgcgtgcacg |
188 |
Q |
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| T |
45810717 |
ttttcaaatttattagcaatgacagtaccaaaattaaggaaaaggtcatatattaaaagaatatagccgcaatttgcattaccttgaccttgcgtgcacg |
45810618 |
T |
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| Q |
189 |
acgtgggaagacaaccaacttggccttgtatgtcttcagcctctggacgttggcttgcagaccttccaacgatcggttcttgcggcgatgat |
280 |
Q |
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| T |
45810617 |
tcttgggaagacaaccaacttggccttgtatgtcttcagcctctgcacgttggcttgcagaccttccaatgatcggttcttgcggcgatgat |
45810526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 6902475 - 6902365
Alignment:
| Q |
168 |
taccttgaccttgcgtgcacgacgtgggaagacaaccaacttggccttgtatgtcttcagcctctggacgttggcttgcagaccttccaacgatcggttc |
267 |
Q |
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||||||| ||||||||| || | |||||| ||||||||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || |||||| |
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| T |
6902475 |
taccttggtcttgcgtgcgcgccttgggaaaacaaccaacttggccttgtatgttttcagcctctgcacattagcttgcagaccctccaaagaacggttc |
6902376 |
T |
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| Q |
268 |
ttgcggcgatg |
278 |
Q |
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||||||||||| |
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| T |
6902375 |
ttgcggcgatg |
6902365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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