View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12400_low_4 (Length: 260)
Name: NF12400_low_4
Description: NF12400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12400_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 26147811 - 26147955
Alignment:
| Q |
20 |
caacaatcaattttcttaattttggtgtttttatcataaaagtcgtgtatttaaaaagggatgtagtgtttaattcccgtgtttaattaat--aaaaaat |
117 |
Q |
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| T |
26147811 |
caacaatcagtttttctaattttgatgtttttatcataaaagtcgtgtatttaaaaagggatgtagtgtttaattcccgtgtttaatttataaaaaaaat |
26147910 |
T |
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| Q |
118 |
ggacattttagttctcaaaagtgtccttataaaatgcaaataggg |
162 |
Q |
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| T |
26147911 |
ggacattttagttctcaaaagtgtccttataaaatgcaaataggg |
26147955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 26149424 - 26149558
Alignment:
| Q |
20 |
caacaatcaattttcttaattttggtgtttttatcataaaagtcgtgtatttaaaaagggatgtagtgtttaattcccgtgtttaattaataaaaaatgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||| | |
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| T |
26149424 |
caacaatcaattttcttaattttggtgtttttatcataaaagtcatgtatttaaaaagggatgtagtgtttaatt------tataa-----aaaaaattg |
26149512 |
T |
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| Q |
120 |
aca-ttttagttctcaaaagtgtccttataaaatgcaaatagggat |
164 |
Q |
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| T |
26149513 |
acatttttagttctcaaaagtgtccttataaaatgcaaatagggat |
26149558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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