View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12400_low_7 (Length: 201)
Name: NF12400_low_7
Description: NF12400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12400_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 45972755 - 45972588
Alignment:
| Q |
21 |
tgtgcaggtccaactaattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcagctgcatacaaatctcctgtttgatgat |
120 |
Q |
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| T |
45972755 |
tgtgcaggtccaactaattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcggctgcatacaaatctcctgtttgatgat |
45972656 |
T |
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| Q |
121 |
tgaaacccaatcctaaaggtcttccacatgttgcttggatatttgagaagtcggaaaatccatcacag |
188 |
Q |
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| T |
45972655 |
tgaaacccaatcctaatggccttccacatattgcttggatatttgagaagtcggaaaatccatcacag |
45972588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 45963875 - 45963743
Alignment:
| Q |
27 |
ggtccaactaattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcagctgcatacaaatctcctgtttgatgattgaaac |
126 |
Q |
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| T |
45963875 |
ggtccaactaattgagttgcattcccaccattggggccaaccttaacaagtccaaaataagcatcagctacatataaatcgtttgtttgatgattgaaac |
45963776 |
T |
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| Q |
127 |
ccaatcctaaaggtcttccacatgttgcttgga |
159 |
Q |
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| T |
45963775 |
ccaatcctaaaggtcttccacatattgcttgga |
45963743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 45957091 - 45956927
Alignment:
| Q |
24 |
gcaggtccaactaattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcagctgcatacaaatctcctgtttgatgattga |
123 |
Q |
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| T |
45957091 |
gcaggtccaactaactgtgttacattccctccatcgggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattga |
45956992 |
T |
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| Q |
124 |
aacccaatcctaaaggtcttccacatgttgcttggatatttgagaagtcggaaaatccatcacag |
188 |
Q |
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| T |
45956991 |
aacccaatcctaatggccttccacatgttgcttggactgctgagaagtcagaaagtccatcacag |
45956927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 45978925 - 45978793
Alignment:
| Q |
27 |
ggtccaactaattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcagctgcatacaaatctcctgtttgatgattgaaac |
126 |
Q |
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| T |
45978925 |
ggtccaactaattgagttgcattcccaccattggggccaaccttaacaagtccaaaataagcatcagctacatataaatcgtttgtttgatgattgaaac |
45978826 |
T |
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| Q |
127 |
ccaatcctaaaggtcttccacatgttgcttgga |
159 |
Q |
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| T |
45978825 |
ccaatcctaatggcctcccacatgttggttgga |
45978793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 45871768 - 45871804
Alignment:
| Q |
21 |
tgtgcaggtccaactaattgggttgctttccctccat |
57 |
Q |
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| T |
45871768 |
tgtgcaggtccaactaattgggttgctttacctccat |
45871804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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