View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_high_2 (Length: 369)
Name: NF12402_high_2
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 9633528 - 9633880
Alignment:
| Q |
18 |
ataactgactaggagcatttgaatctaaacccggtgaactttcaaacctgctgaactttcaaaatctgtctcatcatccagtaactcagcctcgtcttct |
117 |
Q |
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| T |
9633528 |
ataactgactaggagcatttgaatctaaacccggtgaactttcaaacctgctgaacttccaaaatctgtctcatcatccagtaactcagcctcgtcttct |
9633627 |
T |
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| Q |
118 |
tcataaggaagacaattgagatcctgattaagcacaggcaagacnnnnnnnggtggttggaaatcattgttgtttcctttcaattcttcacttgcagagc |
217 |
Q |
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| T |
9633628 |
tcataaggaagacaattgagatcctgattaagcacaggcaagactttttttggtggttggaaatcattgttgtttcctttcaattcttcacttgcagagc |
9633727 |
T |
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| Q |
218 |
tctctggtgta-ttttttgttccttcttcggttccaacttgtatatcatgtggagatcattgagcaagtttggaatagcctgaagctttggattcctgaa |
316 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9633728 |
tctctggtgtacttttttgttccttcttcggttccaacttgtatatcatgtggagatcattgagcaagtttggaatagcctgaagctttggattcctgaa |
9633827 |
T |
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| Q |
317 |
aattaaagaagaacaagacagaggaagttaggtatatggcaatgttgtcactc |
369 |
Q |
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| T |
9633828 |
aattaaagaagaacaagacagaggaagttaggtatatggcaatgttgtcactc |
9633880 |
T |
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