View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_high_3 (Length: 352)
Name: NF12402_high_3
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 4762174 - 4762483
Alignment:
| Q |
11 |
cacagaccagcacctaagtgtaatatttacattattttccagaattcggaaagagatttgcaataccattgtatagttaagttaatggaaccatgagcaa |
110 |
Q |
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| T |
4762174 |
cacagaccagcacctaactgtaatatttacattattttccagaattcggaaagagatttgcaataccattgtatagttaagttaatggaacaatgagcaa |
4762273 |
T |
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| Q |
111 |
ttcaaagtaacattttgttaaaaggagcatt-------gtttataatctttaggcaccct-nnnnnnncactcaaacggtagttaattagcgtgtgttgt |
202 |
Q |
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| T |
4762274 |
ttcaaagtaacatttttttaaaaggagcattgtttatagtttataatctttaggcaccctaaaaaaaacactcaaacagtaattaattagcatgtgttg- |
4762372 |
T |
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| Q |
203 |
gttttcaaactgtagttaactatcgttcattacctcttaaatcggtttaactaatttaaaaagtgtttaagtcggtttaaaaaggtatgtgaacggtcat |
302 |
Q |
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| T |
4762373 |
----tcaaattgtagttaactatcgttcattacctcttaaatcggtttaactaatttaaaaagtgtttaaatcggtttaaaaaggtacgt-aacggtcat |
4762467 |
T |
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| Q |
303 |
tagttgtcgtttgagg |
318 |
Q |
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| T |
4762468 |
tagttatcgtttgagg |
4762483 |
T |
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