View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_high_4 (Length: 295)
Name: NF12402_high_4
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 29660744 - 29660478
Alignment:
| Q |
23 |
cggaaaaccttgaactcataacacttctaatgaaggaagtagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttac |
122 |
Q |
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| T |
29660744 |
cggaaaaccttgaactcataacacttctaatgaaggaaatagtttgttgctcttggttgaacacagaagttgatttcataacagctcaatataatcttac |
29660645 |
T |
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| Q |
123 |
agaaagaataaacaggcaagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattag--aaatccaagaagag |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29660644 |
agaaagaataaacaggcaagtgaagatggttgtttactgaaaatcaaacttactattttgctgaaatgaaatgcacattattagaaaaatccaagaagag |
29660545 |
T |
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| Q |
221 |
--nnnnnnnngtataaactaattctgtttatatacaataaacagacacctttgtcgtttattctgtg |
285 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29660544 |
aaaaaaaaaagtataaactaattctgtttatatacaataagcagacacctttgtcgtttattctgtg |
29660478 |
T |
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